Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2771204..2771347 Replicon chromosome
Accession NZ_AP019630
Organism Enterobacter asburiae strain 17Nkhm-UP2

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2771209..2771312 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2771204..2771347 (+)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FOY94_RS13320 2766911..2768857 + 1947 WP_143346078.1 exodeoxyribonuclease VIII -
FOY94_RS13325 2769071..2769373 + 303 WP_073001979.1 hypothetical protein -
FOY94_RS13330 2769351..2769590 + 240 WP_073001981.1 DUF4060 family protein -
FOY94_RS13335 2769759..2770019 + 261 WP_143346207.1 excisionase -
FOY94_RS13340 2769997..2771076 + 1080 WP_143346079.1 phage integrase Arm DNA-binding domain-containing protein -
- 2771204..2771347 + 144 - - Antitoxin
- 2771209..2771312 - 104 - - Toxin
FOY94_RS13345 2771451..2771789 - 339 WP_033145840.1 YebY family protein -
FOY94_RS13350 2771806..2772675 - 870 WP_048979917.1 copper homeostasis membrane protein CopD -
FOY94_RS13355 2772677..2773048 - 372 WP_048979919.1 CopC domain-containing protein YobA -
FOY94_RS13360 2773185..2773415 + 231 WP_008500465.1 DNA polymerase III subunit theta -
FOY94_RS13365 2773526..2774176 + 651 WP_048979922.1 carbon-nitrogen hydrolase family protein -
FOY94_RS13370 2774201..2774863 + 663 WP_010432611.1 exodeoxyribonuclease X -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 2719710..2776920 57210


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T32772 NZ_AP019630:c2771312-2771209 [Enterobacter asburiae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 144 bp

>AT32772 NZ_AP019630:2771204-2771347 [Enterobacter asburiae]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References