Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
Location | 2771204..2771347 | Replicon | chromosome |
Accession | NZ_AP019630 | ||
Organism | Enterobacter asburiae strain 17Nkhm-UP2 |
Toxin (RNA)
Gene name | SdsR | ||
Locus tag | - | ||
Coordinates | 2771209..2771312 (-) |
Antitoxin (RNA)
Gene name | RyeA | ||
Locus tag | - | ||
Coordinates | 2771204..2771347 (+) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
FOY94_RS13320 | 2766911..2768857 | + | 1947 | WP_143346078.1 | exodeoxyribonuclease VIII | - |
FOY94_RS13325 | 2769071..2769373 | + | 303 | WP_073001979.1 | hypothetical protein | - |
FOY94_RS13330 | 2769351..2769590 | + | 240 | WP_073001981.1 | DUF4060 family protein | - |
FOY94_RS13335 | 2769759..2770019 | + | 261 | WP_143346207.1 | excisionase | - |
FOY94_RS13340 | 2769997..2771076 | + | 1080 | WP_143346079.1 | phage integrase Arm DNA-binding domain-containing protein | - |
- | 2771204..2771347 | + | 144 | - | - | Antitoxin |
- | 2771209..2771312 | - | 104 | - | - | Toxin |
FOY94_RS13345 | 2771451..2771789 | - | 339 | WP_033145840.1 | YebY family protein | - |
FOY94_RS13350 | 2771806..2772675 | - | 870 | WP_048979917.1 | copper homeostasis membrane protein CopD | - |
FOY94_RS13355 | 2772677..2773048 | - | 372 | WP_048979919.1 | CopC domain-containing protein YobA | - |
FOY94_RS13360 | 2773185..2773415 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
FOY94_RS13365 | 2773526..2774176 | + | 651 | WP_048979922.1 | carbon-nitrogen hydrolase family protein | - |
FOY94_RS13370 | 2774201..2774863 | + | 663 | WP_010432611.1 | exodeoxyribonuclease X | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Prophage | - | - | 2719710..2776920 | 57210 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T32772 NZ_AP019630:c2771312-2771209 [Enterobacter asburiae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT32772 NZ_AP019630:2771204-2771347 [Enterobacter asburiae]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT