Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 1086589..1087108 Replicon chromosome
Accession NZ_AP019011
Organism Fluviibacter phosphoraccumulans strain SHINM1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag SHINM1_RS05415 Protein ID WP_162049771.1
Coordinates 1086589..1086876 (-) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag SHINM1_RS05420 Protein ID WP_162049770.1
Coordinates 1086863..1087108 (-) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
SHINM1_RS05390 (SHINM1_010600) 1082517..1084676 - 2160 WP_202930688.1 hypothetical protein -
SHINM1_RS05395 (SHINM1_010610) 1084779..1085126 - 348 WP_162049774.1 transcriptional regulator -
SHINM1_RS05400 (SHINM1_010620) 1085123..1085494 - 372 WP_202930689.1 DUF6516 family protein -
SHINM1_RS11635 1085498..1085620 - 123 WP_272482844.1 hypothetical protein -
SHINM1_RS05405 (SHINM1_010630) 1085741..1086178 - 438 WP_162049773.1 nucleoside deaminase -
SHINM1_RS05410 (SHINM1_010640) 1086207..1086485 - 279 WP_162049772.1 hypothetical protein -
SHINM1_RS05415 (SHINM1_010650) 1086589..1086876 - 288 WP_162049771.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
SHINM1_RS05420 (SHINM1_010660) 1086863..1087108 - 246 WP_162049770.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
SHINM1_RS05425 (SHINM1_010670) 1087172..1088620 - 1449 WP_162049769.1 YdiU family protein -
SHINM1_RS05430 (SHINM1_010680) 1088626..1088883 - 258 WP_162049768.1 hypothetical protein -
SHINM1_RS05435 (SHINM1_010690) 1089063..1089578 + 516 WP_162049767.1 RNA polymerase-binding protein DksA -
SHINM1_RS05440 (SHINM1_010700) 1089683..1091797 - 2115 WP_162050918.1 polyribonucleotide nucleotidyltransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-83)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(8-69)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 10969.05 Da        Isoelectric Point: 10.4134

>T32522 WP_162049771.1 NZ_AP019011:c1086876-1086589 [Fluviibacter phosphoraccumulans]
MPTYKLQFHQLALAEWKKLDKTVRDPLIKKLTERLENPRVPAAALIGMPDCYKIKIHSLGYRLVYRVDDGVVYVTVIAVG
KRERSAVYKTALQRL

Download         Length: 288 bp

>T32522 NZ_AP019011:c1086876-1086589 [Fluviibacter phosphoraccumulans]
TTGCCGACTTATAAACTACAGTTTCACCAGCTTGCATTAGCAGAATGGAAGAAGCTTGATAAAACGGTACGTGACCCACT
AATCAAAAAGCTAACCGAGCGCTTGGAGAACCCACGTGTGCCGGCAGCGGCACTGATTGGTATGCCCGATTGCTACAAAA
TCAAAATACATTCGCTTGGCTATCGTTTGGTATATCGCGTGGATGATGGTGTGGTCTACGTCACGGTCATCGCTGTTGGC
AAGCGGGAAAGAAGCGCGGTATACAAGACTGCCCTTCAGCGCCTTTAA

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 9118.32 Da        Isoelectric Point: 4.3176

>AT32522 WP_162049770.1 NZ_AP019011:c1087108-1086863 [Fluviibacter phosphoraccumulans]
MDNILATMSVSVTELKRNYASIIKDADDSPVAVLNHNRPEAYLLPAGHYERLMSYLEDLEDAKLVRERANGPFVEIDLAD
L

Download         Length: 246 bp

>AT32522 NZ_AP019011:c1087108-1086863 [Fluviibacter phosphoraccumulans]
ATGGACAACATACTTGCAACAATGAGTGTTAGTGTTACCGAGTTAAAGCGAAATTACGCCTCGATTATCAAAGATGCCGA
TGATAGTCCTGTGGCTGTGCTAAATCATAATCGTCCAGAGGCTTATCTGCTTCCTGCGGGGCATTACGAGCGACTTATGA
GCTATCTCGAAGACTTAGAAGATGCTAAGTTGGTCCGAGAAAGAGCGAACGGGCCATTTGTAGAGATTGATCTTGCCGAC
TTATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References