Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 619534..619685 | Replicon | chromosome |
| Accession | NZ_AP019007 | ||
| Organism | Enterobacter oligotrophicus strain CCA6 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 619547..619650 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 619534..619685 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EoCCA6_RS02920 | 615806..617248 | + | 1443 | WP_152081399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EoCCA6_RS02925 | 617355..617594 | + | 240 | WP_006176013.1 | DUF1480 family protein | - |
| EoCCA6_RS02930 | 617628..618272 | - | 645 | WP_152081400.1 | protein-serine/threonine phosphatase | - |
| EoCCA6_RS02935 | 618441..619382 | + | 942 | WP_152081401.1 | VirK/YbjX family protein | - |
| - | 619534..619685 | + | 152 | - | - | Antitoxin |
| - | 619547..619650 | - | 104 | - | - | Toxin |
| EoCCA6_RS02945 | 619789..620127 | - | 339 | WP_152081402.1 | YebY family protein | - |
| EoCCA6_RS02950 | 620144..621013 | - | 870 | WP_152081403.1 | copper homeostasis membrane protein CopD | - |
| EoCCA6_RS02955 | 621015..621386 | - | 372 | WP_152081404.1 | CopC domain-containing protein YobA | - |
| EoCCA6_RS02960 | 621524..621754 | + | 231 | WP_152081405.1 | DNA polymerase III subunit theta | - |
| EoCCA6_RS02965 | 621865..622515 | + | 651 | WP_152081406.1 | carbon-nitrogen hydrolase family protein | - |
| EoCCA6_RS02970 | 622540..623202 | + | 663 | WP_152081407.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T32478 NZ_AP019007:c619650-619547 [Enterobacter oligotrophicus]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 152 bp
>AT32478 NZ_AP019007:619534-619685 [Enterobacter oligotrophicus]
CTTTTATGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTTATGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
