Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2276318..2276589 Replicon chromosome
Accession NZ_AP018802
Organism Escherichia coli strain E2863

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2276356..2276459 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2276318..2276589 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
EL381_RS11590 2273475..2274914 + 1440 WP_000057021.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
EL381_RS11595 2275032..2275268 + 237 WP_001295499.1 DUF1480 family protein -
EL381_RS11600 2275373..2275564 + 192 WP_001296140.1 YebW family protein -
EL381_RS11605 2275565..2276221 - 657 WP_000812724.1 protein-serine/threonine phosphatase -
- 2276318..2276589 + 272 - - Antitoxin
- 2276356..2276459 - 104 - - Toxin
EL381_RS11610 2276617..2276958 - 342 WP_000976492.1 YebY family protein -
EL381_RS11615 2276971..2277843 - 873 WP_000879274.1 copper homeostasis membrane protein CopD -
EL381_RS11620 2277847..2278221 - 375 WP_000204699.1 CopC domain-containing protein YobA -
EL381_RS11625 2278360..2278590 + 231 WP_000916763.1 DNA polymerase III subunit theta -
EL381_RS11630 2278692..2279348 + 657 WP_000011658.1 carbon-nitrogen hydrolase family protein -
EL381_RS11635 2279372..2280034 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T32332 NZ_AP018802:c2276459-2276356 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT32332 NZ_AP018802:2276318-2276589 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References