Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2351735..2352006 | Replicon | chromosome |
| Accession | NZ_AP018796 | ||
| Organism | Escherichia coli strain E2855 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2351773..2351876 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2351735..2352006 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MCREHEC_RS12165 | 2348892..2350331 | + | 1440 | WP_000057021.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| MCREHEC_RS12170 | 2350449..2350685 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| MCREHEC_RS12175 | 2350790..2350981 | + | 192 | WP_001296140.1 | YebW family protein | - |
| MCREHEC_RS12180 | 2350982..2351638 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2351735..2352006 | + | 272 | - | - | Antitoxin |
| - | 2351773..2351876 | - | 104 | - | - | Toxin |
| MCREHEC_RS12185 | 2352034..2352375 | - | 342 | WP_000976492.1 | YebY family protein | - |
| MCREHEC_RS12190 | 2352388..2353260 | - | 873 | WP_000879274.1 | copper homeostasis membrane protein CopD | - |
| MCREHEC_RS12195 | 2353264..2353638 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| MCREHEC_RS12200 | 2353777..2354007 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| MCREHEC_RS12205 | 2354109..2354765 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| MCREHEC_RS12210 | 2354789..2355451 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T32292 NZ_AP018796:c2351876-2351773 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT32292 NZ_AP018796:2351735-2352006 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
