Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2836326..2836594 | Replicon | chromosome |
| Accession | NZ_AP018784 | ||
| Organism | Escherichia coli strain SK1144 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2836364..2836466 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2836326..2836594 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DAECLI1_RS14185 | 2833484..2834923 | + | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| DAECLI1_RS14190 | 2835040..2835276 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| DAECLI1_RS14195 | 2835381..2835572 | + | 192 | WP_001296140.1 | YebW family protein | - |
| DAECLI1_RS14200 | 2835573..2836229 | - | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| - | 2836326..2836594 | + | 269 | - | - | Antitoxin |
| - | 2836364..2836466 | - | 103 | - | - | Toxin |
| DAECLI1_RS14205 | 2836624..2836965 | - | 342 | WP_000976472.1 | YebY family protein | - |
| DAECLI1_RS14210 | 2836978..2837850 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| DAECLI1_RS14215 | 2837854..2838228 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| DAECLI1_RS14220 | 2838367..2838597 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| DAECLI1_RS14225 | 2838699..2839355 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| DAECLI1_RS14230 | 2839379..2840041 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T32248 NZ_AP018784:c2836466-2836364 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT32248 NZ_AP018784:2836326-2836594 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
