Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | IV | Classification (family/domain) | cptAB/Cpta(toxin) |
Location | 965730..966393 | Replicon | chromosome |
Accession | NZ_AP018756 | ||
Organism | Metakosakonia sp. MRY16-398 |
Toxin (Protein)
Gene name | cptA | Uniprot ID | A0A348D8P9 |
Locus tag | MRY16398_RS04660 | Protein ID | WP_039077972.1 |
Coordinates | 965977..966393 (+) | Length | 139 a.a. |
Antitoxin (Protein)
Gene name | cptB | Uniprot ID | A0A348D8P8 |
Locus tag | MRY16398_RS04655 | Protein ID | WP_039077973.1 |
Coordinates | 965730..965996 (+) | Length | 89 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
MRY16398_RS04630 | 960908..962341 | - | 1434 | WP_079497183.1 | 6-phospho-beta-glucosidase | - |
MRY16398_RS04635 | 962465..963193 | - | 729 | WP_039077977.1 | MurR/RpiR family transcriptional regulator | - |
MRY16398_RS04640 | 963246..963557 | + | 312 | WP_039077976.1 | N(4)-acetylcytidine aminohydrolase | - |
MRY16398_RS04645 | 963720..964379 | + | 660 | WP_125123906.1 | hemolysin III family protein | - |
MRY16398_RS04650 | 964497..965480 | - | 984 | WP_071196007.1 | tRNA-modifying protein YgfZ | - |
MRY16398_RS04655 | 965730..965996 | + | 267 | WP_039077973.1 | FAD assembly factor SdhE | Antitoxin |
MRY16398_RS04660 | 965977..966393 | + | 417 | WP_039077972.1 | protein YgfX | Toxin |
MRY16398_RS04665 | 966396..966917 | - | 522 | WP_125123907.1 | flavodoxin FldB | - |
MRY16398_RS04670 | 967019..967915 | + | 897 | WP_039077970.1 | site-specific tyrosine recombinase XerD | - |
MRY16398_RS04675 | 967940..968653 | + | 714 | WP_039077969.1 | bifunctional protein-disulfide isomerase/oxidoreductase DsbC | - |
MRY16398_RS04680 | 968659..970392 | + | 1734 | WP_125123908.1 | single-stranded-DNA-specific exonuclease RecJ | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 139 a.a. Molecular weight: 16438.33 Da Isoelectric Point: 11.4778
>T32068 WP_039077972.1 NZ_AP018756:965977-966393 [Metakosakonia sp. MRY16-398]
VVLWQSDIRVSWRSQWLSLLLHGLMAAFVLLLPWPLSYTPLWLLLLSLVVFDSVRSQRRINACQGEIKLLMDARLRWQGV
EWEIVGTPWMLNIGMILRLRREKDGRRQHLWLAADSMDAQEWRDLRRLISQQSAQRQH
VVLWQSDIRVSWRSQWLSLLLHGLMAAFVLLLPWPLSYTPLWLLLLSLVVFDSVRSQRRINACQGEIKLLMDARLRWQGV
EWEIVGTPWMLNIGMILRLRREKDGRRQHLWLAADSMDAQEWRDLRRLISQQSAQRQH
Download Length: 417 bp
>T32068 NZ_AP018756:965977-966393 [Metakosakonia sp. MRY16-398]
GTGGTCCTGTGGCAATCTGATATACGCGTCTCATGGCGCTCACAGTGGCTCTCACTTTTACTCCATGGCTTGATGGCGGC
TTTCGTGTTGCTGTTACCCTGGCCATTGAGTTATACGCCGCTTTGGTTACTGCTTTTGTCACTGGTGGTGTTCGACAGCG
TACGGAGTCAGCGCCGCATTAATGCCTGTCAGGGAGAGATCAAACTGTTGATGGATGCACGTTTGCGCTGGCAAGGCGTG
GAGTGGGAAATCGTCGGAACACCATGGATGCTGAATATTGGCATGATTCTGCGTTTGCGTCGGGAAAAAGATGGTCGCCG
ACAGCATCTGTGGCTGGCCGCAGATAGCATGGATGCGCAAGAGTGGCGTGATTTGCGCCGACTGATTTCGCAACAATCGG
CGCAGCGTCAGCACTAA
GTGGTCCTGTGGCAATCTGATATACGCGTCTCATGGCGCTCACAGTGGCTCTCACTTTTACTCCATGGCTTGATGGCGGC
TTTCGTGTTGCTGTTACCCTGGCCATTGAGTTATACGCCGCTTTGGTTACTGCTTTTGTCACTGGTGGTGTTCGACAGCG
TACGGAGTCAGCGCCGCATTAATGCCTGTCAGGGAGAGATCAAACTGTTGATGGATGCACGTTTGCGCTGGCAAGGCGTG
GAGTGGGAAATCGTCGGAACACCATGGATGCTGAATATTGGCATGATTCTGCGTTTGCGTCGGGAAAAAGATGGTCGCCG
ACAGCATCTGTGGCTGGCCGCAGATAGCATGGATGCGCAAGAGTGGCGTGATTTGCGCCGACTGATTTCGCAACAATCGG
CGCAGCGTCAGCACTAA
Antitoxin
Download Length: 89 a.a. Molecular weight: 10555.03 Da Isoelectric Point: 6.2199
>AT32068 WP_039077973.1 NZ_AP018756:965730-965996 [Metakosakonia sp. MRY16-398]
MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDDKRVFVRLLQSDDPDLFNWLMNHGKPQDEALQRMIQLIQTRN
RERGPVAI
MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDDKRVFVRLLQSDDPDLFNWLMNHGKPQDEALQRMIQLIQTRN
RERGPVAI
Download Length: 267 bp
>AT32068 NZ_AP018756:965730-965996 [Metakosakonia sp. MRY16-398]
ATGGATATTAACAACAAAGCCCGTATTCATTGGGCATGTCGGCGCGGAATGCGTGAGCTGGATATTTCCATCATGCCTTT
CTTTGAACATGAATATGATTCGCTGAGTGATGATGACAAACGTGTGTTTGTGCGTCTTCTGCAGAGCGATGACCCTGATT
TATTTAACTGGCTGATGAATCACGGCAAACCTCAGGACGAGGCGTTGCAGCGAATGATCCAGTTAATTCAGACACGGAAT
CGGGAACGTGGTCCTGTGGCAATCTGA
ATGGATATTAACAACAAAGCCCGTATTCATTGGGCATGTCGGCGCGGAATGCGTGAGCTGGATATTTCCATCATGCCTTT
CTTTGAACATGAATATGATTCGCTGAGTGATGATGACAAACGTGTGTTTGTGCGTCTTCTGCAGAGCGATGACCCTGATT
TATTTAACTGGCTGATGAATCACGGCAAACCTCAGGACGAGGCGTTGCAGCGAATGATCCAGTTAATTCAGACACGGAAT
CGGGAACGTGGTCCTGTGGCAATCTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A348D8P9 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A348D8P8 |