Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1627225..1627370 | Replicon | chromosome |
| Accession | NZ_AP018747 | ||
| Organism | Klebsiella pneumoniae strain KP33 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1627261..1627363 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1627225..1627370 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D5079_RS08300 | 1622355..1624415 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| D5079_RS08305 | 1624419..1625078 | - | 660 | WP_043906809.1 | exodeoxyribonuclease X | - |
| D5079_RS08310 | 1625157..1625387 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| D5079_RS08315 | 1625500..1625874 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| D5079_RS08320 | 1625878..1626747 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| D5079_RS08325 | 1626764..1627102 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1627225..1627370 | - | 146 | - | - | Antitoxin |
| - | 1627261..1627363 | + | 103 | - | - | Toxin |
| D5079_RS28610 | 1627739..1627882 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| D5079_RS08335 | 1627987..1628955 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| D5079_RS08340 | 1629112..1629765 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| D5079_RS08345 | 1629762..1629953 | - | 192 | WP_002911395.1 | YebW family protein | - |
| D5079_RS08350 | 1630051..1630290 | - | 240 | WP_002911393.1 | YebV family protein | - |
| D5079_RS08355 | 1630406..1631839 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T32011 NZ_AP018747:1627261-1627363 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT32011 NZ_AP018747:c1627370-1627225 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
