Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 4196045..4196664 Replicon chromosome
Accession NZ_AP018671
Organism Klebsiella pneumoniae strain GSU10-3

Toxin (Protein)


Gene name Hha Uniprot ID R8WYV2
Locus tag D6O76_RS21295 Protein ID WP_002892050.1
Coordinates 4196446..4196664 (+) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID J2DPF6
Locus tag D6O76_RS21290 Protein ID WP_002892066.1
Coordinates 4196045..4196419 (+) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
D6O76_RS21280 4191197..4192390 + 1194 WP_002892072.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -
D6O76_RS21285 4192413..4195559 + 3147 WP_020326861.1 multidrug efflux RND transporter permease subunit -
D6O76_RS21290 4196045..4196419 + 375 WP_002892066.1 Hha toxicity modulator TomB Antitoxin
D6O76_RS21295 4196446..4196664 + 219 WP_002892050.1 hemolysin expression modulator Hha Toxin
D6O76_RS21300 4196823..4197389 + 567 WP_002892030.1 maltose O-acetyltransferase -
D6O76_RS30880 4197361..4197501 - 141 WP_004147370.1 hypothetical protein -
D6O76_RS21305 4197522..4197992 + 471 WP_002892026.1 YlaC family protein -
D6O76_RS21310 4197967..4199418 - 1452 WP_002892023.1 PLP-dependent aminotransferase family protein -
D6O76_RS21315 4199519..4200217 + 699 WP_002892021.1 GNAT family N-acetyltransferase -
D6O76_RS21320 4200214..4200354 - 141 WP_002892018.1 type B 50S ribosomal protein L36 -
D6O76_RS21325 4200354..4200617 - 264 WP_002892011.1 type B 50S ribosomal protein L31 -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-116)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8628.00 Da        Isoelectric Point: 8.9008

>T31939 WP_002892050.1 NZ_AP018671:4196446-4196664 [Klebsiella pneumoniae]
MSDKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPTSVWKFIR

Download         Length: 219 bp

>T31939 NZ_AP018671:4196446-4196664 [Klebsiella pneumoniae]
ATGTCTGATAAGCCATTAACTAAAACAGACTATTTGATGCGCTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGCGT
CATTGAAAAAAATAAATATGAACTGTCTGATAATGAGCTGGCGGTATTTTACTCAGCTGCCGACCATCGTCTGGCGGAAC
TGACCATGAATAAGCTATACGATAAAATCCCGACTTCTGTCTGGAAATTTATCCGCTAA

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14368.06 Da        Isoelectric Point: 4.8989

>AT31939 WP_002892066.1 NZ_AP018671:4196045-4196419 [Klebsiella pneumoniae]
MDEYSPKRHDIAQLRFLCETLYHDCLANLEESNHGWVNDPTSAVNLQLNELIEHIATFALNYKIKYAEDNKLIAQVDEYL
DDTFTLFSNYGINSTDLQKWKKSGNRLFRCFVNASRENPASLSC

Download         Length: 375 bp

>AT31939 NZ_AP018671:4196045-4196419 [Klebsiella pneumoniae]
ATGGACGAATACTCGCCAAAAAGACATGATATTGCACAGCTACGCTTTCTCTGCGAAACGCTGTATCATGACTGCCTTGC
AAACCTGGAAGAGAGCAACCATGGCTGGGTCAACGACCCGACGTCGGCTGTCAATCTCCAGTTAAATGAATTGATCGAGC
ACATTGCCACATTCGCTCTTAATTATAAAATTAAGTATGCAGAGGATAATAAGCTGATCGCTCAGGTTGACGAATATCTG
GACGACACTTTTACGTTGTTCAGTAACTACGGCATTAACTCTACGGATTTGCAAAAGTGGAAAAAATCCGGTAACCGACT
ATTTCGTTGCTTTGTCAACGCCAGCCGGGAAAACCCGGCCAGTCTATCGTGTTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2P8K6F2

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GJ93

References