Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2068468..2068613 | Replicon | chromosome |
| Accession | NZ_AP018671 | ||
| Organism | Klebsiella pneumoniae strain GSU10-3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2068504..2068606 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2068468..2068613 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D6O76_RS10480 | 2063598..2065658 | + | 2061 | WP_110437850.1 | oligopeptidase B | - |
| D6O76_RS10485 | 2065662..2066321 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| D6O76_RS10490 | 2066400..2066630 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| D6O76_RS10495 | 2066743..2067117 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| D6O76_RS10500 | 2067121..2067990 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| D6O76_RS10505 | 2068007..2068345 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2068468..2068613 | - | 146 | - | - | Antitoxin |
| - | 2068504..2068606 | + | 103 | - | - | Toxin |
| D6O76_RS30240 | 2068981..2069124 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| D6O76_RS10515 | 2069229..2070197 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| D6O76_RS10520 | 2070354..2071007 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| D6O76_RS10525 | 2071004..2071195 | - | 192 | WP_002911395.1 | YebW family protein | - |
| D6O76_RS10530 | 2071293..2071532 | - | 240 | WP_002911393.1 | YebV family protein | - |
| D6O76_RS10535 | 2071648..2073081 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T31930 NZ_AP018671:2068504-2068606 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT31930 NZ_AP018671:c2068613-2068468 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
