Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2461789..2462060 | Replicon | chromosome |
| Accession | NZ_AP018488 | ||
| Organism | Escherichia coli O157:H7 strain PV15-279 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2461827..2461930 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2461789..2462060 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECpv15279_RS12710 | 2458946..2460385 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ECpv15279_RS12715 | 2460503..2460739 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECpv15279_RS12720 | 2460844..2461035 | + | 192 | WP_001296140.1 | YebW family protein | - |
| ECpv15279_RS12725 | 2461036..2461692 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 2461789..2462060 | + | 272 | - | - | Antitoxin |
| - | 2461827..2461930 | - | 104 | - | - | Toxin |
| ECpv15279_RS12730 | 2462088..2462429 | - | 342 | WP_000976483.1 | YebY family protein | - |
| ECpv15279_RS12735 | 2462442..2463314 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| ECpv15279_RS12740 | 2463318..2463692 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| ECpv15279_RS12745 | 2463831..2464061 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECpv15279_RS12750 | 2464163..2464819 | + | 657 | WP_000011645.1 | carbon-nitrogen hydrolase family protein | - |
| ECpv15279_RS12755 | 2464843..2465505 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T31812 NZ_AP018488:c2461930-2461827 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT31812 NZ_AP018488:2461789-2462060 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
