Detailed information of TA system TA031784

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): relBE/ParE-YafN
• Location: 4261122..4261662
• Replicon: chromosome
• Accession: NZ_AP018441
• Organism: Undibacterium sp. YM2

Toxin (Protein)

• Gene name: relE
• Uniprot ID: -
• Locus tag: UNDYM_RS19185
• Protein ID: WP_162042473.1
• Coordinates: 4261122..4261424 (-)
• Length: 101 a.a.

Antitoxin (Protein)

• Gene name: relB
• Uniprot ID: -
• Locus tag: UNDYM_RS19190
• Protein ID: WP_162044710.1
• Coordinates: 4261414..4261662 (-)
• Length: 83 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
UNDYM_RS19165	4256856..4257317	+	462	WP_162042469.1	hypothetical protein	-
UNDYM_RS19170	4257568..4257867	+	300	WP_162042470.1	hypothetical protein	-
UNDYM_RS19175	4257992..4258753	+	762	WP_162042471.1	hypothetical protein	-
UNDYM_RS19180	4258955..4261045	+	2091	WP_162042472.1	AAA family ATPase	-
UNDYM_RS19185	4261122..4261424	-	303	WP_162042473.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
UNDYM_RS19190	4261414..4261662	-	249	WP_162044710.1	type II toxin-antitoxin system prevent-host-death family antitoxin	Antitoxin
UNDYM_RS19195	4261895..4265302	-	3408	WP_162044711.1	NPCBM/NEW2 domain-containing protein	-
UNDYM_RS19200	4265649..4266509	+	861	WP_162042474.1	hypothetical protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (6-85)

Antitoxin

• Type II toxin-antitoxin system, antitoxin Phd/YefM (10-70)

Sequences

Toxin

Protein

• Length: 101 a.a.
• Molecular weight: 11649.58 Da
• Isoelectric Point: 10.5401

>T31784 WP_162042473.1 NZ_AP018441:c4261424-4261122 [Undibacterium sp. YM2]
MTYELVFNEAALKEWKKLDHTIQAQFKKHLIKRLQHPHVPSARLSGADMKNAYKIKLRDSGYRLVYEVNDNTITVLVLAV
GKRDKSQAYEAARQRIQKIL

Nucleotide

• Length: 303 bp

>T31784 NZ_AP018441:c4261424-4261122 [Undibacterium sp. YM2]
ATGACTTATGAACTTGTATTTAACGAGGCCGCGCTCAAAGAATGGAAAAAGCTTGATCACACCATACAGGCGCAATTTAA
AAAACATCTGATCAAACGCCTGCAACATCCTCATGTTCCTTCTGCCCGGCTCAGTGGCGCTGACATGAAAAACGCTTATA
AAATTAAACTGCGGGATAGTGGCTACAGATTGGTGTATGAAGTCAACGACAACACTATTACTGTGCTTGTCCTCGCGGTG
GGGAAGCGGGATAAAAGTCAGGCTTATGAGGCGGCTAGGCAAAGAATACAGAAAATACTTTGA

Antitoxin

Protein

• Length: 83 a.a.
• Molecular weight: 9089.46 Da
• Isoelectric Point: 5.0893

>AT31784 WP_162044710.1 NZ_AP018441:c4261662-4261414 [Undibacterium sp. YM2]
MTNAIYANATVSITELRRNPGAVIEEAGIEPVAILNHNRATAYLVPADAFEVMMEKLEDIDLAELVRKRRHGKTVKVSLD
DL

Nucleotide

• Length: 249 bp

>AT31784 NZ_AP018441:c4261662-4261414 [Undibacterium sp. YM2]
ATGACTAATGCAATCTATGCCAACGCTACCGTAAGCATTACCGAGCTCCGCCGCAATCCTGGTGCTGTGATAGAAGAAGC
AGGTATTGAGCCGGTGGCCATTCTTAATCACAACCGTGCGACTGCTTATCTGGTTCCGGCAGATGCCTTTGAAGTCATGA
TGGAAAAGCTGGAAGATATTGACCTGGCAGAACTGGTCAGAAAACGCCGCCACGGCAAAACCGTGAAAGTGTCTTTGGAT
GACTTATGA