Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/-
Location 8660777..8661287 Replicon chromosome
Accession NZ_AP018255
Organism Calothrix sp. NIES-4071

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag CDC41_RS38025 Protein ID WP_096691546.1
Coordinates 8661015..8661287 (+) Length 91 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag CDC41_RS38020 Protein ID WP_096691545.1
Coordinates 8660777..8661025 (+) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CDC41_RS37995 8656140..8656367 - 228 WP_096691541.1 hypothetical protein -
CDC41_RS38000 8656579..8656947 + 369 WP_096729149.1 hypothetical protein -
CDC41_RS38005 8656977..8658002 - 1026 WP_096691543.1 acyltransferase family protein -
CDC41_RS38010 8658237..8659295 + 1059 WP_096691544.1 DMT family transporter -
CDC41_RS38015 8659535..8660734 + 1200 WP_096694440.1 HEAT repeat domain-containing protein -
CDC41_RS38020 8660777..8661025 + 249 WP_096691545.1 hypothetical protein Antitoxin
CDC41_RS38025 8661015..8661287 + 273 WP_096691546.1 addiction module antitoxin Toxin
CDC41_RS38030 8661373..8661495 + 123 Protein_7538 addiction module antitoxin -
CDC41_RS38035 8661644..8662105 - 462 WP_096691547.1 DUF2141 domain-containing protein -
CDC41_RS38040 8662148..8663239 + 1092 WP_096694441.1 glycosyltransferase family 4 protein -
CDC41_RS38045 8663293..8664768 - 1476 WP_096691548.1 insulinase family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(10-109)

Antitoxin

SpoVT-AbrB domain

(7-51)


Sequences

Toxin        


Download         Length: 91 a.a.        Molecular weight: 10550.98 Da        Isoelectric Point: 9.8758

>T31736 WP_096691546.1 NZ_AP018255:8661015-8661287 [Calothrix sp. NIES-4071]
MPNEDIISVQFSNEFEEQLYNLSKRYRSIRLDIEPIIEQLQSGNFTGNRIAGIGEEYFFYKVRVRNSNLKKGKSAGYRVI
YSSPKSFVKF

Download         Length: 273 bp

>T31736 NZ_AP018255:8661015-8661287 [Calothrix sp. NIES-4071]
ATGCCAAATGAGGACATTATTTCAGTCCAATTCTCAAATGAGTTTGAAGAACAACTTTATAATCTTTCAAAAAGATATCG
TAGTATCCGCTTAGATATCGAGCCAATTATTGAACAGCTACAATCGGGAAACTTTACTGGTAACAGAATTGCTGGTATTG
GTGAGGAATATTTTTTTTACAAAGTTAGAGTTCGCAACAGTAACCTTAAAAAAGGTAAAAGTGCTGGCTATCGTGTAATA
TATAGCAGTCCTAAATCATTCGTAAAATTTTAA

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9377.47 Da        Isoelectric Point: 4.2910

>AT31736 WP_096691545.1 NZ_AP018255:8660777-8661025 [Calothrix sp. NIES-4071]
MKAIEVTASIDDNGNLILDEPIQVENRSERVRVIVLFTEQEENDPDDTPIEDVKASLRRGFQHFLAGQTRPISELWSRID
AK

Download         Length: 249 bp

>AT31736 NZ_AP018255:8660777-8661025 [Calothrix sp. NIES-4071]
ATGAAAGCTATTGAAGTAACTGCCAGTATTGACGATAACGGAAACCTAATTTTGGATGAACCCATCCAAGTAGAAAATCG
CTCGGAGCGCGTCCGAGTTATAGTATTGTTTACAGAACAAGAAGAAAATGATCCTGATGATACGCCTATAGAAGATGTTA
AGGCTTCTTTAAGAAGAGGATTTCAGCATTTCCTAGCTGGGCAAACTAGACCAATCAGCGAGCTGTGGAGTAGAATTGAT
GCCAAATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References