Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hicA-vapB/HicA-DUF433
Location 8322405..8322735 Replicon chromosome
Accession NZ_AP018255
Organism Calothrix sp. NIES-4071

Toxin (Protein)


Gene name hicA Uniprot ID -
Locus tag CDC41_RS36640 Protein ID WP_096691306.1
Coordinates 8322613..8322735 (+) Length 41 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag CDC41_RS36635 Protein ID WP_096694418.1
Coordinates 8322405..8322626 (+) Length 74 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HicA mRNA interferase family

(4-39)

Antitoxin

Protein of unknown function DUF433

(7-62)


Sequences

Toxin        


Download         Length: 41 a.a.        Molecular weight: 4723.44 Da        Isoelectric Point: 10.7295

>T31734 WP_096691306.1 NZ_AP018255:8322613-8322735 [Calothrix sp. NIES-4071]
MKVREVIKRLEADGWYLDRTRGSHRQYKHPDKPGTVTVKA

Download         Length: 123 bp

>T31734 NZ_AP018255:8322613-8322735 [Calothrix sp. NIES-4071]
ATGAAAGTACGTGAAGTAATCAAGCGATTAGAAGCAGATGGTTGGTATCTTGATAGAACTAGGGGTAGCCATCGACAGTA
TAAACATCCTGATAAACCTGGTACTGTAACAGTAAAGGCGTAA

Antitoxin


Download         Length: 74 a.a.        Molecular weight: 8303.53 Da        Isoelectric Point: 5.0019

>AT31734 WP_096694418.1 NZ_AP018255:8322405-8322626 [Calothrix sp. NIES-4071]
MSFRDIITIEPDKRGGKPCIRRMRITVYDVLSWLAAGMSHAQIMDDFPELTEEDIRACLKFAAVQVNNSNEST

Download         Length: 222 bp

>AT31734 NZ_AP018255:8322405-8322626 [Calothrix sp. NIES-4071]
ATGAGCTTCCGCGACATTATAACAATTGAACCTGATAAGCGAGGCGGTAAGCCCTGTATTCGACGCATGAGAATCACAGT
GTATGATGTTTTAAGCTGGTTAGCAGCAGGGATGTCTCATGCTCAAATAATGGACGATTTTCCTGAATTAACAGAAGAGG
ATATTCGAGCTTGCTTAAAATTTGCTGCTGTACAAGTTAATAACAGTAATGAAAGTACGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References