Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/-
Location 7976973..7977585 Replicon chromosome
Accession NZ_AP018255
Organism Calothrix sp. NIES-4071

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag CDC41_RS35105 Protein ID WP_096691048.1
Coordinates 7976973..7977347 (-) Length 125 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag CDC41_RS35110 Protein ID WP_096691049.1
Coordinates 7977337..7977585 (-) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CDC41_RS35090 7972324..7972706 + 383 Protein_6951 addiction module toxin RelE -
CDC41_RS35095 7972690..7973043 + 354 WP_096691046.1 XRE family transcriptional regulator -
CDC41_RS35100 7973261..7976875 + 3615 WP_096691047.1 helicase -
CDC41_RS35105 7976973..7977347 - 375 WP_096691048.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
CDC41_RS35110 7977337..7977585 - 249 WP_096691049.1 hypothetical protein Antitoxin
CDC41_RS35115 7977666..7980005 - 2340 WP_096691050.1 filamentous hemagglutinin N-terminal domain-containing protein -
CDC41_RS35120 7980093..7981133 - 1041 WP_096691051.1 RRXRR domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Type I toxin-antitoxin system, toxin Ldr

(1-35)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 125 a.a.        Molecular weight: 14340.35 Da        Isoelectric Point: 5.3044

>T31732 WP_096691048.1 NZ_AP018255:c7977347-7976973 [Calothrix sp. NIES-4071]
MPNERPLVIIDLTAEFKRNLRDLSKRFRNIRSDVQLIIEQLEQGNILGDRIGDIGEEYVVYKLRVRNSNIKKGKNAGYRL
IYQVESPTCILLLTIYSKSDREDIAANEIQDIVANFDREEGNSL

Download         Length: 375 bp

>T31732 NZ_AP018255:c7977347-7976973 [Calothrix sp. NIES-4071]
ATGCCGAATGAACGACCATTGGTAATAATTGATTTAACTGCTGAATTCAAACGAAATTTGCGCGACCTTTCTAAGAGATT
TCGCAATATTCGTTCGGATGTTCAATTAATTATTGAACAATTAGAACAAGGAAATATTTTAGGAGATAGAATAGGGGATA
TTGGTGAAGAATATGTTGTTTATAAATTGAGGGTTCGTAATAGTAATATAAAAAAAGGCAAGAATGCTGGGTATAGATTA
ATTTATCAAGTTGAGTCACCTACATGTATTTTGCTATTAACAATTTATTCTAAGTCTGACCGAGAAGATATTGCTGCCAA
TGAAATTCAAGATATTGTAGCTAATTTTGATAGAGAAGAAGGTAATTCTCTATAG

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9181.40 Da        Isoelectric Point: 4.1421

>AT31732 WP_096691049.1 NZ_AP018255:c7977585-7977337 [Calothrix sp. NIES-4071]
MKAIEVTGKIDLEGNLVLDEPIQGTTYREQVRVIVLVPEEAELDPDDTPVEEIKASLRRALHDAKTGQRLPLSQMWEGID
AE

Download         Length: 249 bp

>AT31732 NZ_AP018255:c7977585-7977337 [Calothrix sp. NIES-4071]
ATGAAAGCGATTGAAGTTACTGGCAAAATTGACCTAGAGGGAAACCTAGTATTGGATGAACCGATTCAAGGAACAACTTA
TCGCGAGCAGGTGCGGGTGATTGTGTTGGTTCCAGAAGAAGCAGAACTTGACCCTGATGATACGCCCGTTGAGGAGATTA
AAGCTAGCTTGAGAAGAGCTTTACATGATGCAAAAACAGGGCAGCGTCTACCACTATCTCAAATGTGGGAGGGTATTGAT
GCCGAATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References