Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 2929225..2929939 Replicon chromosome
Accession NZ_AP018033
Organism Mycobacterium tuberculosis strain HN-024

Toxin (Protein)


Gene name vapC Uniprot ID G0TQK0
Locus tag CPZ07_RS14165 Protein ID WP_003413460.1
Coordinates 2929499..2929939 (+) Length 147 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P9WJ20
Locus tag CPZ07_RS14160 Protein ID WP_003413456.1
Coordinates 2929225..2929512 (+) Length 96 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CPZ07_RS14125 2924647..2924892 + 246 WP_031663784.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
CPZ07_RS14130 2924889..2925293 + 405 WP_003413432.1 type II toxin-antitoxin system VapC family toxin -
CPZ07_RS14135 2925510..2926130 + 621 WP_003413441.1 DUF4178 domain-containing protein -
CPZ07_RS14140 2926141..2926635 + 495 WP_003413444.1 DUF2617 family protein -
CPZ07_RS14145 2926632..2927063 + 432 WP_003413445.1 DUF4247 domain-containing protein -
CPZ07_RS14150 2927088..2927546 + 459 WP_003413451.1 DUF350 domain-containing protein -
CPZ07_RS14155 2927543..2929114 + 1572 WP_003899392.1 polyamine aminopropyltransferase -
CPZ07_RS14160 2929225..2929512 + 288 WP_003413456.1 antitoxin VapB41 Antitoxin
CPZ07_RS14165 2929499..2929939 + 441 WP_003413460.1 type II toxin-antitoxin system VapC family toxin Toxin
CPZ07_RS14170 2929960..2930715 - 756 WP_003413464.1 YebC/PmpR family DNA-binding transcriptional regulator -
CPZ07_RS14175 2930848..2931444 - 597 WP_003413465.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
CPZ07_RS14180 2931452..2932297 - 846 WP_003413466.1 acyl-CoA thioesterase II -
CPZ07_RS14185 2932326..2933225 - 900 WP_003413468.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -
CPZ07_RS14190 2933353..2934027 + 675 WP_003413471.1 pyridoxamine 5'-phosphate oxidase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain toxin

(1-146)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 147 a.a.        Molecular weight: 16026.38 Da        Isoelectric Point: 6.8599

>T31496 WP_003413460.1 NZ_AP018033:2929499-2929939 [Mycobacterium tuberculosis]
MLLCDTNIWLALALSGHVHHRASRAWLDTINAPGVIHFCRATQQSLLRLLTNRTVLGAYGSPPLTNREAWAAYAAFLDDD
RIVLAGAEPDGLEAQWRAFAVRQSPAPKVWMDAYLAAFALTGGFELVTTDTAFTQYGGIELRLLAK

Download         Length: 441 bp

>T31496 NZ_AP018033:2929499-2929939 [Mycobacterium tuberculosis]
ATGCTGCTCTGTGACACCAACATCTGGCTGGCGTTGGCGCTTTCCGGACACGTGCACCACAGGGCCTCGCGCGCATGGCT
AGACACCATCAACGCGCCCGGAGTCATCCACTTTTGCCGCGCAACCCAACAGTCGCTCCTTCGGCTGTTGACGAATCGGA
CGGTGCTGGGCGCGTATGGCAGCCCACCACTGACCAACCGCGAAGCGTGGGCGGCCTATGCCGCGTTCCTGGATGACGAC
CGCATCGTGCTGGCCGGCGCCGAACCTGATGGTTTGGAGGCCCAGTGGAGAGCCTTCGCCGTTCGCCAGTCGCCGGCGCC
CAAGGTTTGGATGGATGCCTACCTAGCTGCTTTCGCACTTACCGGTGGATTCGAGTTGGTGACGACTGACACCGCCTTCA
CCCAGTACGGCGGAATCGAGCTGCGGCTCCTGGCCAAGTGA

Antitoxin


Download         Length: 96 a.a.        Molecular weight: 10453.98 Da        Isoelectric Point: 7.2797

>AT31496 WP_003413456.1 NZ_AP018033:2929225-2929512 [Mycobacterium tuberculosis]
MKTTLDLPDELMRAIKVRAAQQGRKMKDVVTELLRSGLSQTHSGAPIPTPRRVQLPLVHCGGAATREQEMTPERVAAALL
DQEAQWWSGHDDAAL

Download         Length: 288 bp

>AT31496 NZ_AP018033:2929225-2929512 [Mycobacterium tuberculosis]
ATGAAGACCACGCTCGACCTGCCTGATGAACTGATGCGCGCTATCAAGGTCCGCGCGGCGCAGCAGGGCCGCAAGATGAA
AGATGTCGTGACCGAACTGCTCAGATCCGGTCTGTCCCAGACGCACAGCGGGGCTCCAATCCCAACGCCGCGGCGCGTGC
AGCTTCCCCTGGTGCATTGCGGTGGCGCGGCTACCCGCGAACAAGAAATGACGCCGGAGCGTGTTGCCGCGGCCTTGCTC
GACCAGGAGGCCCAGTGGTGGTCCGGACACGACGATGCTGCTCTGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB G0TQK0

Antitoxin

Source ID Structure
AlphaFold DB A0A7U4BWB8

References