Detailed information of TA system
Overview
TA module
Type | II | Classification (family/domain) | vapBC/- |
Location | 2201645..2202213 | Replicon | chromosome |
Accession | NZ_AP017898 | ||
Organism | Sphingopyxis sp. FD7 |
Toxin (Protein)
Gene name | vapC | Uniprot ID | - |
Locus tag | SPYCA_RS10395 | Protein ID | WP_120220192.1 |
Coordinates | 2201645..2202010 (-) | Length | 122 a.a. |
Antitoxin (Protein)
Gene name | vapB | Uniprot ID | - |
Locus tag | SPYCA_RS10400 | Protein ID | WP_120222273.1 |
Coordinates | 2202007..2202213 (-) | Length | 69 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
SPYCA_RS10375 | 2197069..2197392 | + | 324 | WP_120220184.1 | YnfA family protein | - |
SPYCA_RS10380 | 2197533..2198246 | - | 714 | WP_120220186.1 | arylesterase | - |
SPYCA_RS10385 | 2198265..2198975 | + | 711 | WP_120220188.1 | ATP-binding cassette domain-containing protein | - |
SPYCA_RS10390 | 2199124..2201625 | + | 2502 | WP_120220190.1 | ABC transporter permease | - |
SPYCA_RS10395 | 2201645..2202010 | - | 366 | WP_120220192.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
SPYCA_RS10400 | 2202007..2202213 | - | 207 | WP_120222273.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin |
SPYCA_RS10405 | 2202523..2203281 | - | 759 | WP_120220194.1 | sulfite exporter TauE/SafE family protein | - |
SPYCA_RS10410 | 2203323..2204480 | - | 1158 | WP_120220196.1 | hypothetical protein | - |
SPYCA_RS10415 | 2204490..2205176 | - | 687 | WP_120220198.1 | helix-turn-helix domain-containing protein | - |
SPYCA_RS10420 | 2205173..2207176 | - | 2004 | WP_120220200.1 | threonine--tRNA ligase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 122 a.a. Molecular weight: 13102.21 Da Isoelectric Point: 6.7161
>T31355 WP_120220192.1 NZ_AP017898:c2202010-2201645 [Sphingopyxis sp. FD7]
MILIDSSVWIDHLRSANAGLALALSEGRVVQHPFVTAELALGSLASRDRFVAMLGLLSPAPVVETARLLDFITNRRLFGT
GLGMVDAHLLASTADMGAARLWTSDRRLAEQAERLGLLYQC
MILIDSSVWIDHLRSANAGLALALSEGRVVQHPFVTAELALGSLASRDRFVAMLGLLSPAPVVETARLLDFITNRRLFGT
GLGMVDAHLLASTADMGAARLWTSDRRLAEQAERLGLLYQC
Download Length: 366 bp
>T31355 NZ_AP017898:c2202010-2201645 [Sphingopyxis sp. FD7]
ATGATCCTGATCGACAGCTCGGTCTGGATCGATCATCTGCGCAGCGCCAATGCCGGGCTTGCGCTGGCGCTTTCCGAGGG
CCGCGTCGTCCAGCACCCGTTCGTCACGGCCGAACTGGCGCTCGGCTCGCTGGCCAGCCGCGACCGGTTCGTCGCGATGC
TTGGGTTGCTTTCGCCCGCGCCGGTGGTCGAAACCGCGCGCTTGCTCGATTTCATAACGAACCGGCGGCTGTTCGGCACC
GGGCTTGGCATGGTCGATGCCCATCTTTTGGCATCGACCGCCGATATGGGCGCCGCGCGGCTCTGGACCAGCGACCGGCG
GCTCGCGGAACAGGCGGAGCGGCTAGGCCTTCTTTATCAATGCTGA
ATGATCCTGATCGACAGCTCGGTCTGGATCGATCATCTGCGCAGCGCCAATGCCGGGCTTGCGCTGGCGCTTTCCGAGGG
CCGCGTCGTCCAGCACCCGTTCGTCACGGCCGAACTGGCGCTCGGCTCGCTGGCCAGCCGCGACCGGTTCGTCGCGATGC
TTGGGTTGCTTTCGCCCGCGCCGGTGGTCGAAACCGCGCGCTTGCTCGATTTCATAACGAACCGGCGGCTGTTCGGCACC
GGGCTTGGCATGGTCGATGCCCATCTTTTGGCATCGACCGCCGATATGGGCGCCGCGCGGCTCTGGACCAGCGACCGGCG
GCTCGCGGAACAGGCGGAGCGGCTAGGCCTTCTTTATCAATGCTGA
Antitoxin
Download Length: 69 a.a. Molecular weight: 7077.96 Da Isoelectric Point: 11.0917
>AT31355 WP_120222273.1 NZ_AP017898:c2202213-2202007 [Sphingopyxis sp. FD7]
VRPQGQAAQQPAADLWAEAARITGIKDRGELERAAVRALIQREAARTLALMGGSDPGATAAPRERSGA
VRPQGQAAQQPAADLWAEAARITGIKDRGELERAAVRALIQREAARTLALMGGSDPGATAAPRERSGA
Download Length: 207 bp
>AT31355 NZ_AP017898:c2202213-2202007 [Sphingopyxis sp. FD7]
GTGCGACCGCAGGGGCAGGCGGCTCAGCAACCGGCCGCCGATTTGTGGGCCGAGGCGGCGCGTATCACCGGCATCAAGGA
TCGCGGCGAGCTGGAGCGGGCGGCCGTCCGCGCGCTCATCCAGCGCGAAGCGGCGCGGACGCTGGCCTTGATGGGCGGCA
GCGATCCCGGCGCCACGGCGGCGCCGCGCGAGCGATCCGGCGCATGA
GTGCGACCGCAGGGGCAGGCGGCTCAGCAACCGGCCGCCGATTTGTGGGCCGAGGCGGCGCGTATCACCGGCATCAAGGA
TCGCGGCGAGCTGGAGCGGGCGGCCGTCCGCGCGCTCATCCAGCGCGAAGCGGCGCGGACGCTGGCCTTGATGGGCGGCA
GCGATCCCGGCGCCACGGCGGCGCCGCGCGAGCGATCCGGCGCATGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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