Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1361281..1361552 | Replicon | chromosome |
| Accession | NZ_AP017617 | ||
| Organism | Escherichia coli strain MRY15-117 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1361412..1361514 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1361281..1361552 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPZ03_RS06930 | 1357836..1358498 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CPZ03_RS06935 | 1358522..1359178 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| CPZ03_RS06940 | 1359280..1359510 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CPZ03_RS06945 | 1359649..1360023 | + | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| CPZ03_RS06950 | 1360027..1360899 | + | 873 | WP_000879323.1 | copper homeostasis membrane protein CopD | - |
| CPZ03_RS06955 | 1360912..1361253 | + | 342 | WP_000976484.1 | YebY family protein | - |
| - | 1361281..1361552 | - | 272 | - | - | Antitoxin |
| - | 1361412..1361514 | + | 103 | - | - | Toxin |
| CPZ03_RS06960 | 1361649..1362305 | + | 657 | WP_000812752.1 | protein-serine/threonine phosphatase | - |
| CPZ03_RS06965 | 1362306..1362497 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CPZ03_RS06970 | 1362602..1362838 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CPZ03_RS06975 | 1362956..1364395 | - | 1440 | WP_024179479.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T31230 NZ_AP017617:1361412-1361514 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT31230 NZ_AP017617:c1361552-1361281 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
