Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1995672..1995940 | Replicon | chromosome |
| Accession | NZ_AP017610 | ||
| Organism | Escherichia coli strain 20Ec-P-124 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1995710..1995812 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1995672..1995940 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPZ02_RS10495 | 1992829..1994268 | + | 1440 | WP_001317885.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CPZ02_RS10500 | 1994386..1994622 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CPZ02_RS10505 | 1994727..1994918 | + | 192 | WP_001317886.1 | YebW family protein | - |
| CPZ02_RS10510 | 1994919..1995575 | - | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| - | 1995672..1995940 | + | 269 | - | - | Antitoxin |
| - | 1995710..1995812 | - | 103 | - | - | Toxin |
| CPZ02_RS10515 | 1995970..1996311 | - | 342 | WP_000976472.1 | YebY family protein | - |
| CPZ02_RS10520 | 1996324..1997196 | - | 873 | WP_000879316.1 | copper homeostasis membrane protein CopD | - |
| CPZ02_RS10525 | 1997200..1997574 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CPZ02_RS10530 | 1997713..1997943 | + | 231 | WP_000916759.1 | DNA polymerase III subunit theta | - |
| CPZ02_RS10535 | 1998045..1998701 | + | 657 | WP_000011673.1 | carbon-nitrogen hydrolase family protein | - |
| CPZ02_RS10540 | 1998725..1999387 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T31194 NZ_AP017610:c1995812-1995710 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT31194 NZ_AP017610:1995672-1995940 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
