Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relB-yefM/Txe-RelB
Location 125827..126334 Replicon chromosome
Accession NZ_AP017579
Organism Rickettsia japonica strain OHH-1

Toxin (Protein)


Gene name relB Uniprot ID G4KM08
Locus tag BZI96_RS00760 Protein ID WP_014013837.1
Coordinates 125827..126090 (-) Length 88 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID G4KM09
Locus tag BZI96_RS00765 Protein ID WP_014013838.1
Coordinates 126083..126334 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BZI96_RS07650 120918..121040 + 123 WP_162557097.1 palindromic element RPE4 domain-containing protein -
BZI96_RS00735 121328..121714 + 387 Protein_137 hypothetical protein -
BZI96_RS00740 121793..122062 + 270 WP_096368100.1 hypothetical protein -
BZI96_RS08075 122084..122260 + 177 WP_158309285.1 hypothetical protein -
BZI96_RS00745 122364..123758 - 1395 WP_014120498.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
BZI96_RS00750 123755..124411 - 657 WP_014013835.1 lysophospholipid acyltransferase family protein -
BZI96_RS00755 124562..125767 - 1206 WP_014120499.1 pyridoxal phosphate-dependent aminotransferase -
BZI96_RS00760 125827..126090 - 264 WP_014013837.1 Txe/YoeB family addiction module toxin Toxin
BZI96_RS00765 126083..126334 - 252 WP_014013838.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
BZI96_RS00770 126474..127478 + 1005 WP_014120500.1 methyltransferase domain-containing protein -
BZI96_RS00775 127483..128238 + 756 WP_024704441.1 VacJ family lipoprotein -
BZI96_RS00780 128258..128857 + 600 WP_014120502.1 phospholipid-binding protein MlaC -
BZI96_RS00790 129082..129369 + 288 WP_024704442.1 ribose-phosphate pyrophosphokinase-like domain-containing protein -
BZI96_RS08580 129556..129945 + 390 WP_197535037.1 palindromic element RPE1 domain-containing protein -
BZI96_RS00800 130090..131157 + 1068 WP_014120503.1 alanine racemase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(6-85)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-74)


Sequences

Toxin        


Download         Length: 88 a.a.        Molecular weight: 10590.39 Da        Isoelectric Point: 9.8255

>T31175 WP_014013837.1 NZ_AP017579:c126090-125827 [Rickettsia japonica]
MIEIEWTLEAAEDLVYWKKYDIKKYERIKLLIKNIQEASFTGIGKPEPLKHILSGLWSRRINHEHRLIYSVNTKQIIIYN
CRFHYKN

Download         Length: 264 bp

>T31175 NZ_AP017579:c126090-125827 [Rickettsia japonica]
ATGATTGAGATTGAGTGGACACTAGAAGCAGCGGAGGATTTAGTGTATTGGAAAAAATACGATATTAAAAAATATGAACG
TATTAAACTTCTAATAAAAAATATCCAAGAAGCATCGTTTACAGGTATAGGTAAGCCCGAACCTTTAAAACATATATTAT
CAGGTTTATGGTCACGTAGAATTAACCACGAACATAGACTAATATATTCTGTCAATACTAAACAAATTATAATATATAAT
TGTAGATTTCATTATAAGAATTAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9537.81 Da        Isoelectric Point: 9.4884

>AT31175 WP_014013838.1 NZ_AP017579:c126334-126083 [Rickettsia japonica]
MNSISGTSFRKNLSSVLNTVENDHVPYLIKRKNHKNIILLTEEEYESTKETLYLLSNLANANRIKKSIEQAKRGEFAKVN
LDD

Download         Length: 252 bp

>AT31175 NZ_AP017579:c126334-126083 [Rickettsia japonica]
ATGAACTCAATTAGCGGCACTTCATTTAGAAAAAACTTAAGCTCTGTACTAAATACCGTAGAAAACGATCATGTCCCTTA
TCTTATTAAAAGAAAGAATCATAAGAATATTATTCTTTTAACCGAAGAAGAATATGAATCTACAAAAGAAACATTATATT
TATTATCTAATCTGGCTAATGCGAATCGAATAAAAAAATCTATCGAACAAGCAAAAAGAGGGGAGTTTGCTAAAGTTAAT
TTAGATGATTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0F3RG12

Antitoxin

Source ID Structure
AlphaFold DB A0A6H3RZ38

References