Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2352380..2352497 Replicon chromosome
Accession NZ_AP017469
Organism Hafnia sp. CBA7124

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2352393..2352496 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2352380..2352497 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
CPY98_RS10795 2347540..2348031 - 492 WP_043493284.1 GAF domain-containing protein -
CPY98_RS10800 2348262..2349506 + 1245 WP_096387648.1 membrane integrity lipid transport subunit YebS -
CPY98_RS10805 2349475..2352105 + 2631 WP_096388751.1 PqiB family protein -
- 2352380..2352497 - 118 - - Antitoxin
- 2352393..2352496 + 104 - - Toxin
CPY98_RS10810 2352559..2352900 - 342 WP_096387650.1 DHCW motif cupin fold protein -
CPY98_RS10815 2353654..2354817 + 1164 WP_038502234.1 porin -
CPY98_RS10820 2354891..2355358 - 468 WP_096387652.1 hypothetical protein -
CPY98_RS10825 2355513..2355950 - 438 WP_096387654.1 peptidoglycan-binding protein LysM -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T31135 NZ_AP017469:2352393-2352496 [Hafnia sp. CBA7124]
GCAAGGCAATCCAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTACCCTAGACCTGATAC
AGGAATCGTATCAGGTCTCTTTTT

Antitoxin


Download         Length: 118 bp

>AT31135 NZ_AP017469:c2352497-2352380 [Hafnia sp. CBA7124]
TAAAAAGAGACCTGATACGATTCCTGTATCAGGTCTAGGGTAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTGGATTGCCTTGCTATTTAAGAGTAG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References