Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YoeB-RelB
Location 3848478..3849034 Replicon chromosome
Accession NZ_AP017375
Organism Stanieria sp. NIES-3757

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag STA3757_RS17330 Protein ID WP_096385205.1
Coordinates 3848729..3849034 (+) Length 102 a.a.

Antitoxin (Protein)


Gene name relE Uniprot ID -
Locus tag STA3757_RS17325 Protein ID WP_096385204.1
Coordinates 3848478..3848732 (+) Length 85 a.a.

Genomic Context

STA3757_RS17325STA3757_RS17330STA3757_RS17335STA3757_RS17340STA3757_RS17355STA3757_RS17310STA3757_RS17315STA3757_RS17320STA3757_RS17345STA3757_RS17350
Location: 3848478..3848732 (255 bp)
Type: Antitoxin
Protein ID: WP_096385204.1
Location: 3848729..3849034 (306 bp)
Type: Toxin
Protein ID: WP_096385205.1
Location: 3849053..3849964 (912 bp)
Type: Others
Protein ID: WP_096388054.1
Location: 3849964..3850725 (762 bp)
Type: Others
Protein ID: WP_096385206.1
Location: 3853362..3853838 (477 bp)
Type: Others
Protein ID: WP_096385209.1
Location: 3844889..3845905 (1017 bp)
Type: Others
Protein ID: WP_096385201.1
Location: 3845938..3846408 (471 bp)
Type: Others
Protein ID: WP_096385202.1
Location: 3846563..3848287 (1725 bp)
Type: Others
Protein ID: WP_096385203.1
Location: 3850895..3851440 (546 bp)
Type: Others
Protein ID: WP_096385207.1
Location: 3851713..3853173 (1461 bp)
Type: Others
Protein ID: WP_096385208.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
STA3757_RS173103844889..3845905-1017WP_096385201.1methyltransferase-
STA3757_RS173153845938..3846408-471WP_096385202.1hypothetical protein-
STA3757_RS173203846563..3848287-1725WP_096385203.1mechanosensitive ion channel family protein-
STA3757_RS173253848478..3848732+255WP_096385204.1type II toxin-antitoxin system prevent-host-death family antitoxinAntitoxin
STA3757_RS173303848729..3849034+306WP_096385205.1Txe/YoeB family addiction module toxinToxin
STA3757_RS173353849053..3849964+912WP_096388054.1HipA domain-containing protein-
STA3757_RS173403849964..3850725+762WP_096385206.1DNA-binding protein-
STA3757_RS173453850895..3851440-546WP_096385207.1DoxX family protein-
STA3757_RS173503851713..3853173-1461WP_096385208.1NAD(P)/FAD-dependent oxidoreductase-
STA3757_RS173553853362..3853838+477WP_096385209.1DM13 domain-containing protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(34-101)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 102 a.a.        Molecular weight: 12259.05 Da        Isoelectric Point: 10.0426

>T31100 WP_096385205.1 NZ_AP017375:3848729-3849034 [Stanieria sp. NIES-3757]
MKLIFAEKAWEDYLYWQRCDPAPTQGARERATRQQTDKKILKRINTLIRDIQRNPFEGIGDPEPLKYNWSGFWSRRITKE
HRLVYAVEKDAILIAQYRFHY

Download         Length: 306 bp

>T31100 NZ_AP017375:3848729-3849034 [Stanieria sp. NIES-3757]
ATGAAGCTGATATTTGCTGAAAAAGCCTGGGAAGATTATTTATATTGGCAGCGTTGCGACCCCGCGCCGACGCAAGGCGC
AAGGGAACGCGCAACAAGACAGCAAACAGATAAAAAAATTCTCAAGCGTATCAATACCCTCATTAGAGATATTCAGAGAA
ATCCTTTTGAAGGAATTGGCGACCCCGAACCACTAAAATATAATTGGTCTGGCTTTTGGTCGAGAAGAATTACTAAAGAA
CATCGACTTGTTTATGCAGTAGAAAAAGATGCAATATTAATTGCTCAATATAGATTTCATTATTAA

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9492.62 Da        Isoelectric Point: 4.5994

>AT31100 WP_096385204.1 NZ_AP017375:3848478-3848732 [Stanieria sp. NIES-3757]
MDTVTYTEFRQKLAGYLNKIEADRTPLIVTRQNAPSVVVMSLDDFKAYEATFHLLSSKNNADRLNNAIDELRSGGGTERE
LIEE

Download         Length: 255 bp

>AT31100 NZ_AP017375:3848478-3848732 [Stanieria sp. NIES-3757]
ATGGATACAGTTACCTATACAGAATTTAGGCAAAAATTAGCTGGATATCTCAACAAAATAGAAGCAGACCGCACCCCATT
GATTGTAACTAGGCAAAATGCACCATCAGTAGTAGTGATGAGCTTGGATGATTTTAAAGCTTATGAAGCTACTTTTCATT
TATTGTCTAGTAAAAATAATGCAGATCGATTAAATAATGCGATCGATGAACTTCGTTCTGGAGGTGGCACAGAACGAGAA
TTAATTGAAGAATGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References