Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yoeB-relB/Txe-RelB
Location 1373985..1374489 Replicon chromosome
Accession NZ_AP017375
Organism Stanieria sp. NIES-3757

Toxin (Protein)


Gene name yoeB Uniprot ID -
Locus tag STA3757_RS06205 Protein ID WP_096382258.1
Coordinates 1373985..1374242 (-) Length 86 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag STA3757_RS06210 Protein ID WP_096382261.1
Coordinates 1374226..1374489 (-) Length 88 a.a.

Genomic Context

STA3757_RS06200STA3757_RS06215STA3757_RS06220STA3757_RS06225STA3757_RS06230STA3757_RS06185STA3757_RS06190STA3757_RS06195STA3757_RS06205STA3757_RS06210
Location: 1372880..1373977 (1098 bp)
Type: Others
Protein ID: WP_096382256.1
Location: 1374560..1375207 (648 bp)
Type: Others
Protein ID: WP_096382263.1
Location: 1375380..1376594 (1215 bp)
Type: Others
Protein ID: WP_096382266.1
Location: 1376787..1377176 (390 bp)
Type: Others
Protein ID: WP_096382268.1
Location: 1377500..1378849 (1350 bp)
Type: Others
Protein ID: WP_096382271.1
Location: 1370234..1371907 (1674 bp)
Type: Others
Protein ID: WP_096382248.1
Location: 1372196..1372540 (345 bp)
Type: Others
Protein ID: WP_096382250.1
Location: 1372522..1372755 (234 bp)
Type: Others
Protein ID: WP_096382253.1
Location: 1373985..1374242 (258 bp)
Type: Toxin
Protein ID: WP_096382258.1
Location: 1374226..1374489 (264 bp)
Type: Antitoxin
Protein ID: WP_096382261.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
STA3757_RS061851370234..1371907-1674WP_096382248.1potassium-transporting ATPase subunit A-
STA3757_RS061901372196..1372540-345WP_096382250.1type II toxin-antitoxin system PemK/MazF family toxin-
STA3757_RS061951372522..1372755-234WP_096382253.1ribbon-helix-helix domain-containing protein-
STA3757_RS062001372880..1373977+1098WP_096382256.1HAMP domain-containing histidine kinase-
STA3757_RS062051373985..1374242-258WP_096382258.1Txe/YoeB family addiction module toxinToxin
STA3757_RS062101374226..1374489-264WP_096382261.1type II toxin-antitoxin system Phd/YefM family antitoxinAntitoxin
STA3757_RS062151374560..1375207+648WP_096382263.1response regulator transcription factor-
STA3757_RS062201375380..1376594+1215WP_096382266.1sodium:proton antiporter-
STA3757_RS062251376787..1377176+390WP_096382268.1response regulator-
STA3757_RS062301377500..1378849+1350WP_096382271.1CHAT domain-containing protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-83)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-68)


Sequences

Toxin        


Download         Length: 86 a.a.        Molecular weight: 10062.79 Da        Isoelectric Point: 10.5397

>T31099 WP_096382258.1 NZ_AP017375:c1374242-1373985 [Stanieria sp. NIES-3757]
MGWKIEFSRQALKDAKKLKAANLQENVLQLIAIIKQNPYQPSYEKLLGNLKGYYSRRINIKHRLIYSLNDVTKTIRIISV
WSHYE

Download         Length: 258 bp

>T31099 NZ_AP017375:c1374242-1373985 [Stanieria sp. NIES-3757]
ATGGGATGGAAGATTGAATTTAGCCGTCAAGCGTTGAAAGATGCTAAAAAATTGAAAGCTGCTAATTTACAAGAGAATGT
TCTACAACTGATTGCAATTATAAAACAAAACCCCTATCAACCTTCCTATGAAAAATTATTGGGTAACTTAAAAGGTTACT
ATTCAAGGAGAATTAATATTAAGCATCGTCTGATTTATTCTTTGAATGATGTTACTAAAACGATTAGAATTATTTCTGTT
TGGTCGCACTATGAATAA

Antitoxin


Download         Length: 88 a.a.        Molecular weight: 9939.17 Da        Isoelectric Point: 4.1283

>AT31099 WP_096382261.1 NZ_AP017375:c1374489-1374226 [Stanieria sp. NIES-3757]
MDILSASEARANLFSLLEQVNKDHLPKVITSRKGDAVLVSKEDWETLQETLYLQSLPGLVRSIKEAEEADDWVSEEEFMR
KLDGMED

Download         Length: 264 bp

>AT31099 NZ_AP017375:c1374489-1374226 [Stanieria sp. NIES-3757]
ATGGATATTCTTAGCGCAAGTGAAGCTAGAGCTAATTTATTTAGTTTATTAGAACAAGTTAATAAAGACCATTTACCAAA
AGTCATTACCAGTAGAAAAGGCGATGCTGTTTTAGTCTCTAAAGAAGATTGGGAAACTTTACAAGAAACACTTTATTTAC
AATCTTTACCTGGTTTAGTGCGATCTATTAAAGAAGCCGAAGAAGCGGATGATTGGGTATCTGAGGAAGAATTTATGAGG
AAATTAGATGGGATGGAAGATTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References