Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1864303..1864535 | Replicon | chromosome |
| Accession | NZ_AP014857 | ||
| Organism | Escherichia albertii strain EC06-170 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1864305..1864408 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1864303..1864535 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AST80_RS09075 | 1860711..1862168 | - | 1458 | WP_024165002.1 | Trk system potassium transporter TrkG | - |
| AST80_RS09080 | 1862241..1862561 | - | 321 | WP_054411012.1 | hypothetical protein | - |
| - | 1864303..1864535 | + | 233 | - | - | Antitoxin |
| - | 1864305..1864408 | - | 104 | - | - | Toxin |
| AST80_RS09090 | 1864565..1864906 | - | 342 | WP_000976487.1 | YebY family protein | - |
| AST80_RS09095 | 1864919..1865791 | - | 873 | WP_060877329.1 | copper homeostasis membrane protein CopD | - |
| AST80_RS09100 | 1865795..1866172 | - | 378 | WP_000741562.1 | CopC domain-containing protein YobA | - |
| AST80_RS09105 | 1866311..1866541 | + | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| AST80_RS09110 | 1866707..1866919 | + | 213 | Protein_1751 | carbon-nitrogen hydrolase family protein | - |
| AST80_RS09115 | 1866943..1867605 | + | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T30960 NZ_AP014857:c1864408-1864305 [Escherichia albertii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT30960 NZ_AP014857:1864303-1864535 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
