Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1843709..1843941 | Replicon | chromosome |
| Accession | NZ_AP014856 | ||
| Organism | Escherichia albertii strain CB9786 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1843711..1843813 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1843709..1843941 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AST72_RS09410 | 1839030..1839794 | + | 765 | Protein_1755 | hypothetical protein | - |
| AST72_RS09415 | 1840114..1841571 | - | 1458 | WP_095575778.1 | Trk system potassium transporter TrkG | - |
| - | 1843709..1843941 | + | 233 | - | - | Antitoxin |
| - | 1843711..1843813 | - | 103 | - | - | Toxin |
| AST72_RS09430 | 1843971..1844312 | - | 342 | WP_000976487.1 | YebY family protein | - |
| AST72_RS09435 | 1844325..1845197 | - | 873 | WP_059276071.1 | copper homeostasis membrane protein CopD | - |
| AST72_RS09440 | 1845201..1845578 | - | 378 | WP_059267604.1 | CopC domain-containing protein YobA | - |
| AST72_RS09445 | 1845717..1845947 | + | 231 | WP_095575780.1 | DNA polymerase III subunit theta | - |
| AST72_RS09450 | 1846113..1846325 | + | 213 | Protein_1761 | carbon-nitrogen hydrolase family protein | - |
| AST72_RS09455 | 1846349..1847011 | + | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | espJ | 1836234..1844312 | 8078 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T30940 NZ_AP014856:c1843813-1843711 [Escherichia albertii]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT30940 NZ_AP014856:1843709-1843941 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
