Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1767892..1768124 | Replicon | chromosome |
| Accession | NZ_AP014855 | ||
| Organism | Escherichia albertii strain NIAH_Bird_3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1767894..1767997 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1767892..1768124 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AST93_RS08655 | 1764297..1765754 | - | 1458 | WP_095573957.1 | Trk system potassium transporter TrkG | - |
| AST93_RS22900 | 1766020..1766169 | + | 150 | WP_002462310.1 | hypothetical protein | - |
| - | 1767892..1768124 | + | 233 | - | - | Antitoxin |
| - | 1767894..1767997 | - | 104 | - | - | Toxin |
| AST93_RS08670 | 1768154..1768495 | - | 342 | WP_095573959.1 | YebY family protein | - |
| AST93_RS08675 | 1768508..1769380 | - | 873 | WP_095573960.1 | copper homeostasis membrane protein CopD | - |
| AST93_RS08680 | 1769384..1769761 | - | 378 | WP_095573961.1 | CopC domain-containing protein YobA | - |
| AST93_RS08685 | 1769900..1770130 | + | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| AST93_RS08690 | 1770297..1770509 | + | 213 | Protein_1626 | carbon-nitrogen hydrolase family protein | - |
| AST93_RS08695 | 1770533..1771195 | + | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | espJ | 1759575..1768495 | 8920 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T30916 NZ_AP014855:c1767997-1767894 [Escherichia albertii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT30916 NZ_AP014855:1767892-1768124 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGGCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGGCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
