Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) virT-relB/YafQ-RelB
Location 1923054..1923574 Replicon chromosome
Accession NZ_AP014724
Organism Sulfurospirillum cavolei strain UCH003

Toxin (Protein)


Gene name virT Uniprot ID -
Locus tag UCH003_RS09670 Protein ID WP_060826360.1
Coordinates 1923054..1923326 (-) Length 91 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag UCH003_RS09675 Protein ID WP_060826361.1
Coordinates 1923323..1923574 (-) Length 84 a.a.

Genomic Context

UCH003_RS09650UCH003_RS09665UCH003_RS09685UCH003_RS09690UCH003_RS09655UCH003_RS09660UCH003_RS09670UCH003_RS09675UCH003_RS09680
Location: 1919894..1920337 (444 bp)
Type: Others
Protein ID: WP_060826356.1
Location: 1922635..1922961 (327 bp)
Type: Others
Protein ID: WP_060826359.1
Location: 1924907..1925767 (861 bp)
Type: Others
Protein ID: WP_060826363.1
Location: 1926251..1926904 (654 bp)
Type: Others
Protein ID: WP_060826364.1
Location: 1920413..1921777 (1365 bp)
Type: Others
Protein ID: WP_060826357.1
Location: 1921911..1922372 (462 bp)
Type: Others
Protein ID: WP_144441007.1
Location: 1923054..1923326 (273 bp)
Type: Toxin
Protein ID: WP_060826360.1
Location: 1923323..1923574 (252 bp)
Type: Antitoxin
Protein ID: WP_060826361.1
Location: 1923629..1924762 (1134 bp)
Type: Others
Protein ID: WP_060826362.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
UCH003_RS096501919894..1920337+444WP_060826356.1NUDIX domain-containing protein-
UCH003_RS096551920413..1921777-1365WP_060826357.1OprD family outer membrane porin-
UCH003_RS096601921911..1922372-462WP_144441007.1hypothetical protein-
UCH003_RS096651922635..1922961+327WP_060826359.1hypothetical protein-
UCH003_RS096701923054..1923326-273WP_060826360.1type II toxin-antitoxin system YafQ family toxinToxin
UCH003_RS096751923323..1923574-252WP_060826361.1type II toxin-antitoxin system RelB/DinJ family antitoxinAntitoxin
UCH003_RS096801923629..1924762-1134WP_060826362.1hypothetical protein-
UCH003_RS096851924907..1925767+861WP_060826363.1EamA family transporter-
UCH003_RS096901926251..1926904+654WP_060826364.14Fe-4S dicluster domain-containing protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, YafQ-like toxin

(5-89)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(6-69)


Sequences

Toxin        


Download         Length: 91 a.a.        Molecular weight: 10465.30 Da        Isoelectric Point: 9.3596

>T30881 WP_060826360.1 NZ_AP014724:c1923326-1923054 [Sulfurospirillum cavolei]
MKYAIFRTSSFKKAYKKLSSSEQELVLTIVLKLAQGESLDEKYKDHFLIGNYKGCRECHIKPDLLLIYKINNDEVELVLV
EVGKHSKLFK

Download         Length: 273 bp

>T30881 NZ_AP014724:c1923326-1923054 [Sulfurospirillum cavolei]
ATGAAATACGCCATCTTTCGTACATCTTCTTTCAAAAAAGCCTATAAAAAGCTCTCATCCTCTGAGCAAGAACTTGTTTT
AACGATTGTTCTTAAACTTGCTCAGGGTGAAAGTTTGGATGAAAAATACAAAGATCATTTTCTGATAGGCAACTATAAAG
GATGCAGGGAGTGTCACATTAAACCTGATTTACTGCTCATCTACAAAATCAATAACGATGAAGTGGAATTAGTTTTGGTG
GAAGTTGGTAAGCATTCTAAATTGTTTAAATAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9443.97 Da        Isoelectric Point: 6.3501

>AT30881 WP_060826361.1 NZ_AP014724:c1923574-1923323 [Sulfurospirillum cavolei]
MRTGTSVRIDEETKIIASEVLKQYGMNLSEGINLFCKQVAMTYSIPFELKVPTERMKKALKELEKREGKSFDSIEALKAD
LES

Download         Length: 252 bp

>AT30881 NZ_AP014724:c1923574-1923323 [Sulfurospirillum cavolei]
ATGAGAACAGGAACCAGTGTTCGTATTGATGAAGAGACTAAGATTATTGCTTCAGAAGTGTTAAAACAGTATGGTATGAA
CCTCAGTGAAGGCATTAACCTTTTTTGTAAGCAAGTTGCTATGACGTATTCCATCCCTTTTGAGTTAAAAGTGCCAACGG
AGAGAATGAAAAAAGCACTGAAAGAACTAGAAAAAAGAGAAGGAAAATCCTTTGATTCCATCGAAGCACTCAAAGCCGAT
CTTGAGTCATGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References