Detailed information of TA system TA030791

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): relBE/RHH(antitoxin)
• Location: 994031..994569
• Replicon: chromosome
• Accession: NZ_AP014628
• Organism: Pseudomonas sp. St29

Toxin (Protein)

• Gene name: relE
• Uniprot ID: -
• Locus tag: PST29_RS04420
• Protein ID: WP_060845068.1
• Coordinates: 994291..994569 (+)
• Length: 93 a.a.

Antitoxin (Protein)

• Gene name: relB
• Uniprot ID: -
• Locus tag: PST29_RS30705
• Protein ID: WP_082729317.1
• Coordinates: 994031..994294 (+)
• Length: 88 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
PST29_RS04400	990008..992299	-	2292	WP_060842471.1	TonB-dependent siderophore receptor	-
PST29_RS04405	992507..993187	+	681	WP_060842472.1	Fe2+-dependent dioxygenase	-
PST29_RS04410	993191..993976	+	786	WP_060842473.1	sel1 repeat family protein	-
PST29_RS30705	994031..994294	+	264	WP_082729317.1	ribbon-helix-helix domain-containing protein	Antitoxin
PST29_RS04420	994291..994569	+	279	WP_060845068.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
PST29_RS04425	994654..995817	-	1164	WP_047301731.1	type III PLP-dependent enzyme	-
PST29_RS04430	996469..997626	-	1158	WP_060837512.1	ABC transporter ATP-binding protein	-
PST29_RS04435	997623..998276	-	654	WP_060842475.1	ABC transporter permease	-
PST29_RS04440	998292..999188	-	897	WP_060842476.1	glycine betaine ABC transporter substrate-binding protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (4-91)

Antitoxin

• Ribbon-helix-helix protein, CopG (7-44)

Sequences

Toxin

Protein

• Length: 93 a.a.
• Molecular weight: 10787.51 Da
• Isoelectric Point: 10.9953

>T30791 WP_060845068.1 NZ_AP014628:994291-994569 [Pseudomonas sp. St29]
MRQLKWTSKALSDLARLFEFLAQVNRSAAARTVQSLVRAPDALLSNPRLGEQLEEFKPRDVRRLLVGHYEVRYEIQGMAL
SILRIWHVREDR

Nucleotide

• Length: 279 bp

>T30791 NZ_AP014628:994291-994569 [Pseudomonas sp. St29]
ATGAGACAGTTGAAATGGACGAGCAAGGCGCTATCCGATCTGGCTCGGCTGTTTGAATTTCTCGCTCAGGTTAATCGCTC
GGCTGCTGCTCGGACCGTGCAATCCCTCGTGCGGGCTCCAGATGCGCTTCTATCCAACCCTCGATTGGGAGAGCAGTTGG
AGGAATTCAAGCCGAGGGATGTTCGACGGTTGCTGGTGGGGCATTACGAGGTGCGTTATGAGATTCAAGGCATGGCCTTG
TCCATCCTGCGTATTTGGCATGTCCGGGAAGATCGTTGA

Antitoxin

Protein

• Length: 88 a.a.
• Molecular weight: 9705.16 Da
• Isoelectric Point: 5.6921

>AT30791 WP_082729317.1 NZ_AP014628:994031-994294 [Pseudomonas sp. St29]
MPATKVLTAHIPLDLADKVDQLASRLERSRAWIVKQALVAWVDQEEERRRLTLEALADVDAGRVVDHQSVLAWAESLSGD
KPLPLPK

Nucleotide

• Length: 264 bp

>AT30791 NZ_AP014628:994031-994294 [Pseudomonas sp. St29]
ATGCCCGCGACAAAAGTACTGACCGCCCACATTCCTTTGGATCTGGCGGATAAGGTCGATCAACTGGCTTCTCGCTTGGA
GCGCTCCCGTGCCTGGATCGTGAAGCAAGCATTGGTGGCCTGGGTTGACCAGGAAGAAGAGCGCCGCCGACTGACGCTTG
AGGCCTTGGCAGATGTCGATGCTGGAAGGGTTGTCGATCATCAGTCAGTGCTGGCTTGGGCAGAGAGTCTGTCTGGCGAC
AAGCCTCTGCCTTTACCAAAATGA