Detailed information of TA system TA030787

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): relBE/ParE-YafN
• Location: 175694..176210
• Replicon: chromosome
• Accession: NZ_AP014628
• Organism: Pseudomonas sp. St29

Toxin (Protein)

• Gene name: relE
• Uniprot ID: -
• Locus tag: PST29_RS00775
• Protein ID: WP_060842109.1
• Coordinates: 175929..176210 (+)
• Length: 94 a.a.

Antitoxin (Protein)

• Gene name: relB
• Uniprot ID: A0A0D6BA30
• Locus tag: PST29_RS00770
• Protein ID: WP_060841856.1
• Coordinates: 175694..175939 (+)
• Length: 82 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
PST29_RS00755	173188..174798	+	1611	WP_060842108.1	glycosyltransferase family 39 protein	-
PST29_RS00760	174908..175369	+	462	WP_019093517.1	YbaK/EbsC family protein	-
PST29_RS00765	175384..175629	+	246	WP_047300786.1	DUF2789 domain-containing protein	-
PST29_RS00770	175694..175939	+	246	WP_060841856.1	type II toxin-antitoxin system Phd/YefM family antitoxin	Antitoxin
PST29_RS00775	175929..176210	+	282	WP_060842109.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
PST29_RS00780	176353..176781	+	429	WP_060836935.1	winged helix DNA-binding protein	-
PST29_RS00785	176778..178865	+	2088	WP_060842110.1	FUSC family protein	-
PST29_RS00790	178862..179071	+	210	WP_011058538.1	DUF1656 domain-containing protein	-
PST29_RS00795	179068..179958	+	891	WP_060836937.1	HlyD family secretion protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (5-81)

Antitoxin

• Type II toxin-antitoxin system, antitoxin Phd/YefM (8-68)

Sequences

Toxin

Protein

• Length: 94 a.a.
• Molecular weight: 10819.78 Da
• Isoelectric Point: 10.5009

>T30787 WP_060842109.1 NZ_AP014628:175929-176210 [Pseudomonas sp. St29]
MTYRLEFLPSAHKEWNKLGHTLRAPFKKKLAERLEVPRIPADALHGLPDCYKIKLKASGYRLVYQVIEERVVVCVVAVGK
RERGTVYEQARKR

Nucleotide

• Length: 282 bp

>T30787 NZ_AP014628:175929-176210 [Pseudomonas sp. St29]
ATGACTTATAGACTTGAGTTCCTGCCTTCGGCACACAAGGAATGGAACAAGTTGGGGCATACCCTTCGAGCGCCATTCAA
GAAAAAGCTCGCCGAACGGCTTGAGGTGCCGCGAATCCCGGCTGATGCCCTGCACGGACTTCCCGATTGCTACAAGATCA
AACTCAAGGCTTCGGGTTACCGGCTGGTTTATCAAGTGATCGAAGAACGGGTAGTGGTTTGCGTGGTTGCGGTAGGCAAG
CGCGAGCGTGGAACTGTGTACGAGCAGGCCAGGAAGCGCTGA

Antitoxin

Protein

• Length: 82 a.a.
• Molecular weight: 8727.04 Da
• Isoelectric Point: 4.5164

>AT30787 WP_060841856.1 NZ_AP014628:175694-175939 [Pseudomonas sp. St29]
MQSILADKAVSVSELKKNPSAVLSGAQGGPVAVLNHNRVMGYMVPAEVFEALMERLDDLELAEIVRARSHETPVPVSLDD
L

Nucleotide

• Length: 246 bp

>AT30787 NZ_AP014628:175694-175939 [Pseudomonas sp. St29]
ATGCAGAGCATTCTGGCTGACAAAGCCGTCAGCGTATCCGAGTTGAAGAAAAACCCGTCTGCCGTCTTGAGTGGTGCCCA
GGGGGGACCCGTGGCGGTGTTGAATCACAATCGTGTCATGGGCTACATGGTTCCGGCCGAGGTTTTCGAGGCGTTGATGG
AACGCCTGGATGATCTTGAGCTGGCCGAGATCGTTCGCGCGCGCAGCCATGAGACGCCCGTCCCGGTCAGTCTGGATGAC
TTATAG

Structures

Antitoxin

• AlphaFold DB: A0A0D6BA30