Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/-
Location 2982608..2983883 Replicon chromosome
Accession NZ_AP014522
Organism Pseudomonas protegens Cab57

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag PPC_RS13670 Protein ID WP_041117840.1
Coordinates 2983284..2983883 (+) Length 200 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag PPC_RS13665 Protein ID WP_041120629.1
Coordinates 2982608..2983165 (+) Length 186 a.a.

Genomic Context

PPC_RS13635PPC_RS13640PPC_RS13645PPC_RS13655PPC_RS13665PPC_RS13670PPC_RS13675PPC_RS13650PPC_RS13660PPC_RS13680PPC_RS13685PPC_RS13690
Location: 2978124..2978354 (231 bp)
Type: Others
Protein ID: WP_041117828.1
Location: 2978400..2979050 (651 bp)
Type: Others
Protein ID: WP_041117830.1
Location: 2979138..2979758 (621 bp)
Type: Others
Protein ID: WP_041117832.1
Location: 2980802..2981989 (1188 bp)
Type: Others
Protein ID: WP_041117836.1
Location: 2982608..2983165 (558 bp)
Type: Antitoxin
Protein ID: WP_041120629.1
Location: 2983284..2983883 (600 bp)
Type: Toxin
Protein ID: WP_041117840.1
Location: 2984097..2986277 (2181 bp)
Type: Others
Protein ID: WP_041117842.1
Location: 2979804..2980391 (588 bp)
Type: Others
Protein ID: WP_041117834.1
Location: 2982077..2982418 (342 bp)
Type: Others
Protein ID: WP_041117838.1
Location: 2986339..2987025 (687 bp)
Type: Others
Protein ID: WP_041117844.1
Location: 2986985..2987605 (621 bp)
Type: Others
Protein ID: WP_011060988.1
Location: 2987672..2988100 (429 bp)
Type: Others
Protein ID: WP_041117846.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
PPC_RS136352978124..2978354+231WP_041117828.1DUF3079 domain-containing protein-
PPC_RS136402978400..2979050+651WP_041117830.1DUF2239 family protein-
PPC_RS136452979138..2979758+621WP_041117832.1LysE family translocator-
PPC_RS136502979804..2980391-588WP_041117834.1inclusion body family protein-
PPC_RS136552980802..2981989+1188WP_041117836.1PrpF protein-
PPC_RS136602982077..2982418-342WP_041117838.1low molecular weight protein tyrosine phosphatase family protein-
PPC_RS136652982608..2983165+558WP_041120629.1helix-turn-helix domain-containing proteinAntitoxin
PPC_RS136702983284..2983883+600WP_041117840.1HD domain-containing proteinToxin
PPC_RS136752984097..2986277+2181WP_041117842.1catalase/peroxidase HPI-
PPC_RS136802986339..2987025-687WP_041117844.1hypothetical protein-
PPC_RS136852986985..2987605-621WP_011060988.1hypothetical protein-
PPC_RS136902987672..2988100-429WP_041117846.1hypothetical protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HD domain

(16-168)

Antitoxin

Cro/C1-type helix-turn-helix domain

(12-47)


Sequences

Toxin        


Download         Length: 200 a.a.        Molecular weight: 22404.18 Da        Isoelectric Point: 5.8807

>T30630 WP_041117840.1 NZ_AP014522:2983284-2983883 [Pseudomonas protegens Cab57]
MNSELLSGRLDFLREAEKLKDVLRSAHTSSGRQESTAEHSWRLCLMALLFEDQLGDLDLLRVLKLCIVHDLGEAIHGDIP
AVAQAAHPNKSQQERDDLQYLARALDAPARQCLLDLWDEYEGAASAEARTVKALDKLETLLQHTQGQNPAGFDYRFNLGY
GRRYTDASPLFLALRQQIDADTQRRLDAQAQAAGQHRLR

Download         Length: 600 bp

>T30630 NZ_AP014522:2983284-2983883 [Pseudomonas protegens Cab57]
ATGAACAGTGAACTTCTCAGCGGCCGCCTCGACTTTCTCCGTGAAGCGGAAAAACTCAAGGACGTGCTGCGCAGCGCCCA
CACCTCCAGCGGCCGCCAGGAAAGCACCGCCGAGCACAGCTGGCGCCTGTGCCTGATGGCGCTACTGTTCGAAGACCAAC
TGGGGGACCTGGACCTGCTGCGGGTGCTGAAGCTGTGCATCGTCCACGACTTGGGGGAGGCCATTCACGGCGACATCCCG
GCGGTGGCCCAGGCGGCGCACCCGAACAAGAGCCAGCAGGAACGCGACGACCTGCAATACCTCGCCCGGGCCCTGGACGC
TCCGGCCCGCCAATGCCTGTTGGATCTGTGGGATGAATACGAGGGCGCCGCCAGCGCCGAGGCGCGCACGGTCAAGGCCC
TGGACAAGCTGGAAACCCTGCTGCAACACACCCAGGGCCAGAACCCGGCGGGTTTCGACTACCGCTTCAACCTCGGCTAC
GGCCGCCGCTACACCGACGCCAGCCCACTGTTCCTGGCCCTGCGCCAGCAGATCGATGCCGACACCCAGCGCCGCCTGGA
CGCCCAGGCTCAGGCCGCGGGTCAGCATCGGCTGCGCTAA

Antitoxin


Download         Length: 186 a.a.        Molecular weight: 20412.38 Da        Isoelectric Point: 7.7603

>AT30630 WP_041120629.1 NZ_AP014522:2982608-2983165 [Pseudomonas protegens Cab57]
MSAALFTSPHLGLALRRWRLLHRVKQQHAAELFGVAQSSISRWENGRQAMEPAERARLEQLLAANLSAAADQALARLVND
SPRAVHLVCDLTHRLLACSPTRAGQFGVPLSELLGQSLWGFCTEEIVRKEAALDDLGWREVLAPPSLEFFSGRNDSAIVP
IAPSQCRWTRLNLSDGNAVRLVETL

Download         Length: 558 bp

>AT30630 NZ_AP014522:2982608-2983165 [Pseudomonas protegens Cab57]
ATGTCCGCAGCCTTATTCACCTCACCCCATCTGGGCCTGGCCCTCAGGCGCTGGCGCCTGTTGCACCGGGTCAAACAGCA
GCACGCCGCCGAGCTGTTCGGCGTGGCGCAGTCGAGCATTTCCCGCTGGGAAAACGGCCGGCAGGCCATGGAACCGGCAG
AGCGTGCGCGTCTGGAACAACTGCTGGCAGCCAACCTCAGCGCCGCCGCCGATCAGGCCCTGGCGCGGCTGGTGAATGAC
AGCCCGCGTGCCGTGCACCTGGTTTGCGACCTGACCCACCGCCTGCTGGCCTGTTCGCCGACCCGCGCCGGGCAGTTCGG
CGTGCCCTTGAGCGAGCTGCTGGGCCAATCCCTGTGGGGCTTCTGCACCGAGGAAATCGTGCGCAAGGAAGCCGCCCTGG
ATGACCTGGGCTGGCGCGAAGTGCTGGCGCCGCCGTCCCTGGAATTCTTCAGCGGCCGCAACGATTCGGCCATCGTACCC
ATCGCCCCCAGCCAGTGCCGCTGGACCCGCCTCAACCTGTCCGACGGCAACGCCGTGCGGCTGGTGGAAACCCTCTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References