Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1443026..1443166 | Replicon | chromosome |
| Accession | NZ_AP013063 | ||
| Organism | Serratia marcescens SM39 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1443070..1443166 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1443026..1443166 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SM39_RS06950 | 1438227..1438652 | + | 426 | WP_033653830.1 | RNA polymerase-binding protein DksA | - |
| SM39_RS06955 | 1438845..1439798 | + | 954 | WP_041034678.1 | prolyl aminopeptidase | - |
| SM39_RS06960 | 1439830..1440060 | - | 231 | WP_033642715.1 | DNA polymerase III subunit theta | - |
| SM39_RS06965 | 1440406..1440924 | + | 519 | WP_025302449.1 | non-heme ferritin | - |
| SM39_RS06970 | 1441217..1441633 | + | 417 | WP_052475413.1 | CopC domain-containing protein YobA | - |
| SM39_RS06975 | 1441636..1442517 | + | 882 | WP_041034681.1 | copper homeostasis membrane protein CopD | - |
| SM39_RS06980 | 1442587..1442928 | + | 342 | WP_025302452.1 | YebY family protein | - |
| - | 1443026..1443166 | - | 141 | - | - | Antitoxin |
| - | 1443070..1443166 | + | 97 | - | - | Toxin |
| SM39_RS06985 | 1443408..1443812 | + | 405 | WP_041034683.1 | hypothetical protein | - |
| SM39_RS06990 | 1443809..1444027 | - | 219 | WP_004940942.1 | hypothetical protein | - |
| SM39_RS25920 | 1444091..1444249 | - | 159 | WP_154232809.1 | hypothetical protein | - |
| SM39_RS06995 | 1444540..1444890 | + | 351 | WP_033638116.1 | DUF4377 domain-containing protein | - |
| SM39_RS07000 | 1445074..1446273 | + | 1200 | WP_033638117.1 | trans-2-enoyl-CoA reductase family protein | - |
| SM39_RS07005 | 1446501..1446719 | + | 219 | WP_033646423.1 | hypothetical protein | - |
| SM39_RS07010 | 1446891..1447196 | + | 306 | WP_033638119.1 | hypothetical protein | - |
| SM39_RS07015 | 1447240..1447575 | + | 336 | WP_033638120.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T30582 NZ_AP013063:1443070-1443166 [Serratia marcescens SM39]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT30582 NZ_AP013063:c1443166-1443026 [Serratia marcescens SM39]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
