Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | ccdAB/CcdA(antitoxin) |
Location | 1235034..1235590 | Replicon | chromosome |
Accession | NZ_AP012547 | ||
Organism | Sulfuritalea hydrogenivorans sk43H strain DSM 22779 |
Toxin (Protein)
Gene name | ccdB | Uniprot ID | W0SDZ6 |
Locus tag | SUTH_RS05940 | Protein ID | WP_041097833.1 |
Coordinates | 1235034..1235348 (-) | Length | 105 a.a. |
Antitoxin (Protein)
Gene name | ccdA | Uniprot ID | W0SD66 |
Locus tag | SUTH_RS05945 | Protein ID | WP_041097835.1 |
Coordinates | 1235348..1235590 (-) | Length | 81 a.a. |
Genomic Context
Location: 1231671..1232216 (546 bp)
Type: Others
Protein ID: WP_041097827.1
Type: Others
Protein ID: WP_041097827.1
Location: 1235702..1236652 (951 bp)
Type: Others
Protein ID: WP_052473317.1
Type: Others
Protein ID: WP_052473317.1
Location: 1232161..1233075 (915 bp)
Type: Others
Protein ID: WP_084207274.1
Type: Others
Protein ID: WP_084207274.1
Location: 1233089..1233349 (261 bp)
Type: Others
Protein ID: WP_041097829.1
Type: Others
Protein ID: WP_041097829.1
Location: 1233353..1235017 (1665 bp)
Type: Others
Protein ID: WP_041097831.1
Type: Others
Protein ID: WP_041097831.1
Location: 1235034..1235348 (315 bp)
Type: Toxin
Protein ID: WP_041097833.1
Type: Toxin
Protein ID: WP_041097833.1
Location: 1235348..1235590 (243 bp)
Type: Antitoxin
Protein ID: WP_041097835.1
Type: Antitoxin
Protein ID: WP_041097835.1
Location: 1236653..1236922 (270 bp)
Type: Others
Protein ID: WP_041097837.1
Type: Others
Protein ID: WP_041097837.1
Location: 1236931..1238376 (1446 bp)
Type: Others
Protein ID: WP_084207275.1
Type: Others
Protein ID: WP_084207275.1
Location: 1238271..1238954 (684 bp)
Type: Others
Protein ID: WP_041097841.1
Type: Others
Protein ID: WP_041097841.1
Location: 1239189..1239713 (525 bp)
Type: Others
Protein ID: WP_041097843.1
Type: Others
Protein ID: WP_041097843.1
Location: 1239753..1240133 (381 bp)
Type: Others
Protein ID: WP_041097845.1
Type: Others
Protein ID: WP_041097845.1
Location: 1240133..1240345 (213 bp)
Type: Others
Protein ID: WP_041097847.1
Type: Others
Protein ID: WP_041097847.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
SUTH_RS05920 | 1231671..1232216 | + | 546 | WP_041097827.1 | ubiquinol-cytochrome c reductase iron-sulfur subunit | - |
SUTH_RS05925 | 1232161..1233075 | - | 915 | WP_084207274.1 | DMT family transporter | - |
SUTH_RS05930 | 1233089..1233349 | - | 261 | WP_041097829.1 | hypothetical protein | - |
SUTH_RS05935 | 1233353..1235017 | - | 1665 | WP_041097831.1 | energy-dependent translational throttle protein EttA | - |
SUTH_RS05940 | 1235034..1235348 | - | 315 | WP_041097833.1 | CcdB family protein | Toxin |
SUTH_RS05945 | 1235348..1235590 | - | 243 | WP_041097835.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin |
SUTH_RS18330 | 1235702..1236652 | + | 951 | WP_052473317.1 | hypothetical protein | - |
SUTH_RS05955 | 1236653..1236922 | - | 270 | WP_041097837.1 | biotin/lipoyl-binding protein | - |
SUTH_RS05960 | 1236931..1238376 | - | 1446 | WP_084207275.1 | tRNA 5-hydroxyuridine modification protein YegQ | - |
SUTH_RS05965 | 1238271..1238954 | - | 684 | WP_041097841.1 | glutathione S-transferase family protein | - |
SUTH_RS05970 | 1239189..1239713 | - | 525 | WP_041097843.1 | glycine cleavage system protein R | - |
SUTH_RS05975 | 1239753..1240133 | - | 381 | WP_041097845.1 | type II toxin-antitoxin system VapC family toxin | - |
SUTH_RS05980 | 1240133..1240345 | - | 213 | WP_041097847.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
No matching records found |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 105 a.a. Molecular weight: 11316.08 Da Isoelectric Point: 4.4667
>T30564 WP_041097833.1 NZ_AP012547:c1235348-1235034 [Sulfuritalea hydrogenivorans sk43H]
MAHLDVFRNPDATTASVIPYVVDVQSELLADLPTHVVIPLAYPEAIETPILRLNPKVGVGDTALVVLTQDMASVSNRLLR
HPVANLSPQRDEILAALDFLFTGF
MAHLDVFRNPDATTASVIPYVVDVQSELLADLPTHVVIPLAYPEAIETPILRLNPKVGVGDTALVVLTQDMASVSNRLLR
HPVANLSPQRDEILAALDFLFTGF
Download Length: 315 bp
>T30564 NZ_AP012547:c1235348-1235034 [Sulfuritalea hydrogenivorans sk43H]
ATGGCTCACCTCGACGTCTTTCGCAATCCGGATGCCACGACGGCAAGCGTCATCCCCTACGTAGTCGACGTCCAGAGCGA
ACTGCTCGCTGACCTGCCTACCCACGTCGTCATCCCCTTGGCCTATCCTGAAGCCATCGAGACCCCGATCCTGCGCCTCA
ACCCGAAAGTCGGCGTCGGCGACACGGCGTTGGTCGTATTGACACAGGACATGGCCTCGGTGTCAAACCGCCTGCTGCGA
CACCCCGTTGCCAACCTTTCCCCCCAGCGCGACGAGATCCTTGCCGCGCTGGATTTCCTTTTCACCGGTTTCTGA
ATGGCTCACCTCGACGTCTTTCGCAATCCGGATGCCACGACGGCAAGCGTCATCCCCTACGTAGTCGACGTCCAGAGCGA
ACTGCTCGCTGACCTGCCTACCCACGTCGTCATCCCCTTGGCCTATCCTGAAGCCATCGAGACCCCGATCCTGCGCCTCA
ACCCGAAAGTCGGCGTCGGCGACACGGCGTTGGTCGTATTGACACAGGACATGGCCTCGGTGTCAAACCGCCTGCTGCGA
CACCCCGTTGCCAACCTTTCCCCCCAGCGCGACGAGATCCTTGCCGCGCTGGATTTCCTTTTCACCGGTTTCTGA
Antitoxin
Download Length: 81 a.a. Molecular weight: 9234.59 Da Isoelectric Point: 9.8330
>AT30564 WP_041097835.1 NZ_AP012547:c1235590-1235348 [Sulfuritalea hydrogenivorans sk43H]
MSAHPKKAANLTVRADLLEEARARKINLSQTLEVALSVELKKCRETEWLEQNKEAIAAYGRFVEKHGVFSDRFRNFMREG
MSAHPKKAANLTVRADLLEEARARKINLSQTLEVALSVELKKCRETEWLEQNKEAIAAYGRFVEKHGVFSDRFRNFMREG
Download Length: 243 bp
>AT30564 NZ_AP012547:c1235590-1235348 [Sulfuritalea hydrogenivorans sk43H]
ATGAGCGCCCATCCCAAGAAAGCCGCCAACCTCACCGTCCGCGCCGATCTGCTTGAAGAAGCCCGCGCGCGCAAGATCAA
CCTCTCGCAGACGCTCGAAGTCGCGCTTTCCGTCGAGCTGAAGAAGTGTCGCGAAACCGAGTGGCTGGAGCAGAACAAGG
AGGCCATTGCCGCCTACGGGCGTTTCGTCGAGAAGCACGGCGTGTTCTCCGACCGCTTCCGCAACTTCATGCGTGAGGGT
TGA
ATGAGCGCCCATCCCAAGAAAGCCGCCAACCTCACCGTCCGCGCCGATCTGCTTGAAGAAGCCCGCGCGCGCAAGATCAA
CCTCTCGCAGACGCTCGAAGTCGCGCTTTCCGTCGAGCTGAAGAAGTGTCGCGAAACCGAGTGGCTGGAGCAGAACAAGG
AGGCCATTGCCGCCTACGGGCGTTTCGTCGAGAAGCACGGCGTGTTCTCCGACCGCTTCCGCAACTTCATGCGTGAGGGT
TGA