Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE-Phd
Location 4194932..4195497 Replicon chromosome
Accession NC_023150
Organism Rhodococcus pyridinivorans SB3094

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag Y013_RS19105 Protein ID WP_024102981.1
Coordinates 4195219..4195497 (+) Length 93 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag Y013_RS19100 Protein ID WP_006551856.1
Coordinates 4194932..4195222 (+) Length 97 a.a.

Genomic Context

Y013_RS19075Y013_RS19080Y013_RS19085Y013_RS19090Y013_RS19095Y013_RS19100Y013_RS19105Y013_RS19125Y013_RS19130Y013_RS19110Y013_RS19115Y013_RS19120Y013_RS19135
Location: 4190166..4190767 (602 bp)
Type: Others
Protein ID: Protein_3807
Location: 4190764..4191192 (429 bp)
Type: Others
Protein ID: WP_024102975.1
Location: 4191197..4192798 (1602 bp)
Type: Others
Protein ID: WP_024102976.1
Location: 4192875..4193903 (1029 bp)
Type: Others
Protein ID: WP_024102977.1
Location: 4193900..4194718 (819 bp)
Type: Others
Protein ID: WP_024102978.1
Location: 4194932..4195222 (291 bp)
Type: Antitoxin
Protein ID: WP_006551856.1
Location: 4195219..4195497 (279 bp)
Type: Toxin
Protein ID: WP_024102981.1
Location: 4197774..4198604 (831 bp)
Type: Others
Protein ID: WP_024102985.1
Location: 4198649..4199620 (972 bp)
Type: Others
Protein ID: WP_006551850.1
Location: 4195554..4196033 (480 bp)
Type: Others
Protein ID: WP_024102982.1
Location: 4196092..4196841 (750 bp)
Type: Others
Protein ID: WP_024102983.1
Location: 4196991..4197653 (663 bp)
Type: Others
Protein ID: WP_024102984.1
Location: 4199656..4200375 (720 bp)
Type: Others
Protein ID: WP_041803971.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
Y013_RS190754190166..4190767+602Protein_3807TetR/AcrR family transcriptional regulator-
Y013_RS190804190764..4191192+429WP_024102975.1HIT family protein-
Y013_RS190854191197..4192798+1602WP_024102976.1L-lactate permease-
Y013_RS190904192875..4193903+1029WP_024102977.1Dyp-type peroxidase-
Y013_RS190954193900..4194718+819WP_024102978.1bacteriocin family protein-
Y013_RS191004194932..4195222+291WP_006551856.1type II toxin-antitoxin system Phd/YefM family antitoxinAntitoxin
Y013_RS191054195219..4195497+279WP_024102981.1type II toxin-antitoxin system RelE/ParE family toxinToxin
Y013_RS191104195554..4196033-480WP_024102982.1MarR family transcriptional regulator-
Y013_RS191154196092..4196841-750WP_024102983.1cutinase family protein-
Y013_RS191204196991..4197653-663WP_024102984.1alpha-ketoglutarate-dependent dioxygenase AlkB-
Y013_RS191254197774..4198604+831WP_024102985.1SDR family oxidoreductase-
Y013_RS191304198649..4199620+972WP_006551850.1phosphotriesterase-
Y013_RS191354199656..4200375-720WP_041803971.12OG-Fe(II) oxygenase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(34-91)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(3-73)


Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10268.82 Da        Isoelectric Point: 10.2002

>T30445 WP_024102981.1 NC_023150:4195219-4195497 [Rhodococcus pyridinivorans SB3094]
MSTPDHPYRLVMARSAARAMARSLPEKVATAVYEFVTGPLLENPKRVGKPLNPPLAPAYSARRGEYRVLYLIDDANRTVE
VTAISHRADAYR

Download         Length: 279 bp

>T30445 NC_023150:4195219-4195497 [Rhodococcus pyridinivorans SB3094]
ATGAGCACTCCGGACCACCCGTATCGGCTGGTGATGGCGAGGTCGGCTGCACGCGCCATGGCGAGGTCGTTGCCGGAGAA
GGTAGCAACTGCGGTATACGAGTTCGTCACAGGACCCCTTCTCGAGAATCCGAAGCGGGTGGGGAAGCCGTTGAATCCTC
CTCTTGCGCCGGCGTACAGCGCCCGGCGAGGTGAATATCGCGTCCTGTATCTGATCGATGATGCGAACCGCACGGTCGAG
GTCACCGCGATTTCGCACCGTGCCGATGCGTATCGATAG

Antitoxin


Download         Length: 97 a.a.        Molecular weight: 10788.92 Da        Isoelectric Point: 4.2336

>AT30445 WP_006551856.1 NC_023150:4194932-4195222 [Rhodococcus pyridinivorans SB3094]
MYMTTLPVADARAQLSRLVDEAERTHERFEITRNGHRAAVLLGADDYDAMQETIAVLSDTDLLRAHVEGRTEVESGDVVD
VQELTQLMRDARSSEE

Download         Length: 291 bp

>AT30445 NC_023150:4194932-4195222 [Rhodococcus pyridinivorans SB3094]
ATGTACATGACGACTCTTCCTGTTGCCGACGCGCGGGCGCAATTGTCACGACTGGTCGATGAGGCCGAGCGCACACACGA
GCGATTCGAGATCACCCGCAACGGGCACCGCGCCGCGGTGCTTCTCGGTGCCGACGATTACGACGCGATGCAGGAGACGA
TCGCGGTGTTGTCGGATACGGATCTGCTGCGGGCGCACGTCGAGGGCCGAACGGAGGTCGAGTCGGGAGACGTCGTCGAT
GTACAGGAATTGACGCAGCTGATGCGTGATGCTCGGTCGTCCGAGGAATGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References