Detailed information of TA system TA030415

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): relE-dinJ/YafQ-RelB
• Location: 2658174..2658699
• Replicon: chromosome
• Accession: NC_023065
• Organism: Magnetospirillum gryphiswaldense MSR-1 v2

Toxin (Protein)

• Gene name: relE
• Uniprot ID: -
• Locus tag: MGMSRV2_RS12580
• Protein ID: WP_024080726.1
• Coordinates: 2658174..2658455 (-)
• Length: 94 a.a.

Antitoxin (Protein)

• Gene name: dinJ
• Uniprot ID: -
• Locus tag: MGMSRV2_RS12585
• Protein ID: WP_024080727.1
• Coordinates: 2658442..2658699 (-)
• Length: 86 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
MGMSRV2_RS12560	2653367..2653801	+	435	WP_024080721.1	hypothetical protein	-
MGMSRV2_RS12565	2653824..2654783	+	960	WP_024080722.1	hypothetical protein	-
MGMSRV2_RS12570	2654795..2655319	+	525	WP_041633608.1	hypothetical protein	-
MGMSRV2_RS21460	2655358..2655510	+	153	WP_024080724.1	hypothetical protein	-
MGMSRV2_RS12575	2655609..2658170	+	2562	WP_024080725.1	phage tail length tape measure family protein	-
MGMSRV2_RS12580	2658174..2658455	-	282	WP_024080726.1	type II toxin-antitoxin system YafQ family toxin	Toxin
MGMSRV2_RS12585	2658442..2658699	-	258	WP_024080727.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	Antitoxin
MGMSRV2_RS12590	2658790..2659284	+	495	WP_024080728.1	hypothetical protein	-
MGMSRV2_RS12595	2659292..2660329	+	1038	WP_024080729.1	hypothetical protein	-
MGMSRV2_RS12600	2660335..2660652	+	318	WP_024080730.1	hypothetical protein	-
MGMSRV2_RS12605	2660823..2663039	+	2217	WP_024080731.1	hypothetical protein	-
MGMSRV2_RS12610	2663055..2663327	+	273	WP_144084304.1	hypothetical protein	-
MGMSRV2_RS12615	2663331..2663666	+	336	WP_024080733.1	hypothetical protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Prophage	-	-	2645362..2667551	22189

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (4-91)

Antitoxin

• RelB antitoxin/Antitoxin DinJ (2-69)

Sequences

Toxin

Protein

• Length: 94 a.a.
• Molecular weight: 10948.36 Da
• Isoelectric Point: 6.8453

>T30415 WP_024080726.1 NC_023065:c2658455-2658174 [Magnetospirillum gryphiswaldense MSR-1 v2]
MRTINRTGQFKRDYKREKKGRHRETLDADLVDVVSKLVADEPLEERHHDHALTGNWKDHRDCHIKPDLVLIYRLPDEETL
DLVRLGSHSELGL

Nucleotide

• Length: 282 bp

>T30415 NC_023065:c2658455-2658174 [Magnetospirillum gryphiswaldense MSR-1 v2]
ATGCGGACGATTAACCGCACCGGCCAGTTCAAGCGGGACTACAAGCGTGAAAAGAAGGGTCGGCATCGGGAAACCCTCGA
TGCCGACCTTGTCGATGTTGTCTCGAAGCTGGTGGCCGACGAGCCCCTGGAGGAGCGGCATCACGACCATGCCCTGACCG
GGAACTGGAAGGATCATCGCGACTGCCATATCAAGCCCGATCTGGTCCTGATCTACCGACTCCCCGACGAAGAGACGCTC
GATCTGGTGCGTCTCGGCTCGCACAGCGAACTCGGCCTGTAA

Antitoxin

Protein

• Length: 86 a.a.
• Molecular weight: 9325.82 Da
• Isoelectric Point: 4.7824

>AT30415 WP_024080727.1 NC_023065:c2658699-2658442 [Magnetospirillum gryphiswaldense MSR-1 v2]
MNTVVRARIDEHLKDEAALVLSSIGLTVSDAFRMMMVRIATEKRLPFEPLVPNAETIAAMEAARRGDVVRVGSVKDLMAD
LNADD

Nucleotide

• Length: 258 bp

>AT30415 NC_023065:c2658699-2658442 [Magnetospirillum gryphiswaldense MSR-1 v2]
ATGAACACTGTTGTCCGTGCCCGCATCGACGAGCACCTGAAGGACGAGGCAGCACTCGTGCTGTCGTCGATCGGCCTGAC
CGTGTCCGACGCCTTCCGCATGATGATGGTGCGGATCGCCACCGAGAAGCGGTTGCCGTTCGAGCCCCTGGTTCCCAATG
CCGAAACCATCGCCGCGATGGAGGCCGCCCGGCGCGGCGACGTGGTCCGGGTCGGCAGCGTCAAGGATCTGATGGCGGAT
CTGAATGCGGACGATTAA