Detailed information of TA system TA030411

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): relBE/YafQ-DinJ
• Location: 712862..713388
• Replicon: chromosome
• Accession: NC_023065
• Organism: Magnetospirillum gryphiswaldense MSR-1 v2

Toxin (Protein)

• Gene name: relE
• Uniprot ID: -
• Locus tag: MGMSRV2_RS03360
• Protein ID: WP_024078925.1
• Coordinates: 713116..713388 (+)
• Length: 91 a.a.

Antitoxin (Protein)

• Gene name: relB
• Uniprot ID: -
• Locus tag: MGMSRV2_RS03355
• Protein ID: WP_024078924.1
• Coordinates: 712862..713119 (+)
• Length: 86 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
MGMSRV2_RS03335	710675..710860	-	186	WP_024078920.1	hypothetical protein	-
MGMSRV2_RS03340	710887..711402	-	516	WP_024078921.1	hypothetical protein	-
MGMSRV2_RS03345	711405..712364	-	960	WP_024078922.1	hypothetical protein	-
MGMSRV2_RS03350	712383..712811	-	429	WP_024078923.1	hypothetical protein	-
MGMSRV2_RS03355	712862..713119	+	258	WP_024078924.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	Antitoxin
MGMSRV2_RS03360	713116..713388	+	273	WP_024078925.1	type II toxin-antitoxin system YafQ family toxin	Toxin
MGMSRV2_RS03365	713395..714033	-	639	WP_024078926.1	hypothetical protein	-
MGMSRV2_RS03370	714030..714326	-	297	WP_024078927.1	hypothetical protein	-
MGMSRV2_RS03375	714326..715348	-	1023	WP_024078928.1	major capsid protein	-
MGMSRV2_RS03380	715362..715751	-	390	WP_024078929.1	head decoration protein	-
MGMSRV2_RS03385	715764..716990	-	1227	WP_024078930.1	S49 family peptidase	-
MGMSRV2_RS03390	717063..717326	+	264	WP_084028218.1	type II toxin-antitoxin system Phd/YefM family antitoxin	-
MGMSRV2_RS03395	717326..717730	+	405	WP_024078932.1	type II toxin-antitoxin system VapC family toxin	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Prophage	-	-	675809..726787	50978

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (6-89)

Antitoxin

• RelB antitoxin/Antitoxin DinJ (4-76)

Sequences

Toxin

Protein

• Length: 91 a.a.
• Molecular weight: 10549.02 Da
• Isoelectric Point: 6.8519

>T30411 WP_024078925.1 NC_023065:713116-713388 [Magnetospirillum gryphiswaldense MSR-1 v2]
MSRTLRTTKQFDRDLKTATKRGKTLDKLWQVVECLVNSEPLAIRHRPHRLSGNWSPCWECHIEPDWLLIWYETEDELVLA
ATGTHSDLFG

Nucleotide

• Length: 273 bp

>T30411 NC_023065:713116-713388 [Magnetospirillum gryphiswaldense MSR-1 v2]
TTGAGCCGGACGCTCCGCACCACGAAGCAATTCGATCGCGATCTCAAGACGGCGACCAAACGAGGCAAGACTCTCGACAA
GCTCTGGCAGGTGGTGGAGTGCCTGGTGAACAGCGAGCCGCTGGCCATCCGGCACCGTCCCCACCGTCTGTCGGGCAATT
GGAGTCCCTGCTGGGAATGCCATATCGAGCCGGACTGGCTATTGATCTGGTACGAAACCGAGGATGAGTTGGTGCTGGCG
GCCACCGGCACCCATTCCGATCTGTTCGGCTGA

Antitoxin

Protein

• Length: 86 a.a.
• Molecular weight: 9356.65 Da
• Isoelectric Point: 6.2169

>AT30411 WP_024078924.1 NC_023065:712862-713119 [Magnetospirillum gryphiswaldense MSR-1 v2]
MSKTESIRARVEPDLKAQAEAVFGALGLTPTEAITLFYRQVTLHHGLPFPVRIPNEATQAALRDAMEGENLTEWSSLDAL
KAAHR

Nucleotide

• Length: 258 bp

>AT30411 NC_023065:712862-713119 [Magnetospirillum gryphiswaldense MSR-1 v2]
ATGTCGAAGACCGAATCGATCCGCGCCCGCGTCGAACCCGACCTCAAAGCCCAGGCCGAGGCCGTTTTCGGTGCGCTTGG
CCTGACCCCGACCGAGGCGATCACCCTGTTCTATCGTCAGGTGACCCTGCACCACGGACTGCCGTTCCCCGTCCGCATTC
CCAACGAAGCCACGCAGGCGGCTCTCCGCGATGCCATGGAAGGTGAGAACCTGACCGAATGGTCGAGCCTTGATGCGCTG
AAGGCCGCCCATCGTTGA