Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | hicAB/HicA(toxin) |
Location | 4306572..4307179 | Replicon | chromosome |
Accession | NC_023064 | ||
Organism | Pseudomonas sp. TKP |
Toxin (Protein)
Gene name | hicA | Uniprot ID | A0A855JTJ8 |
Locus tag | U771_RS19030 | Protein ID | WP_024076056.1 |
Coordinates | 4306572..4306823 (+) | Length | 84 a.a. |
Antitoxin (Protein)
Gene name | hicB | Uniprot ID | A0A855JUN5 |
Locus tag | U771_RS19035 | Protein ID | WP_024076057.1 |
Coordinates | 4306820..4307179 (+) | Length | 120 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
U771_RS19030 | 4306572..4306823 | + | 252 | WP_024076056.1 | type II toxin-antitoxin system HicA family toxin | Toxin |
U771_RS19035 | 4306820..4307179 | + | 360 | WP_024076057.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin |
U771_RS19040 | 4307180..4308352 | - | 1173 | WP_024076058.1 | MFS transporter | - |
U771_RS19045 | 4308393..4309748 | - | 1356 | WP_024076059.1 | MATE family efflux transporter | - |
U771_RS19050 | 4309775..4310347 | - | 573 | WP_024076060.1 | DUF2239 family protein | - |
U771_RS19055 | 4310710..4311057 | - | 348 | WP_024076061.1 | zinc ribbon domain-containing protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 84 a.a. Molecular weight: 9562.13 Da Isoelectric Point: 10.0941
>T30409 WP_024076056.1 NC_023064:4306572-4306823 [Pseudomonas sp. TKP]
VSKNEKLLAKLLNEHMTFTWPELVTLLRRLGYTQIEGAGSRVKFDIGDPTAMITLHKPHPGNELKHYIRRQVIEQLRSGD
LIQ
VSKNEKLLAKLLNEHMTFTWPELVTLLRRLGYTQIEGAGSRVKFDIGDPTAMITLHKPHPGNELKHYIRRQVIEQLRSGD
LIQ
Download Length: 252 bp
>T30409 NC_023064:4306572-4306823 [Pseudomonas sp. TKP]
GTGTCCAAAAATGAAAAGCTGCTCGCCAAACTGCTCAATGAACACATGACATTCACCTGGCCCGAGCTCGTCACGCTGCT
GCGTCGGCTTGGCTACACACAAATCGAGGGGGCGGGAAGCCGCGTCAAGTTCGACATCGGCGACCCCACGGCAATGATCA
CCTTGCACAAGCCTCACCCCGGCAACGAACTGAAACACTACATTCGTCGCCAGGTCATCGAACAATTGAGATCAGGAGAC
CTGATTCAGTGA
GTGTCCAAAAATGAAAAGCTGCTCGCCAAACTGCTCAATGAACACATGACATTCACCTGGCCCGAGCTCGTCACGCTGCT
GCGTCGGCTTGGCTACACACAAATCGAGGGGGCGGGAAGCCGCGTCAAGTTCGACATCGGCGACCCCACGGCAATGATCA
CCTTGCACAAGCCTCACCCCGGCAACGAACTGAAACACTACATTCGTCGCCAGGTCATCGAACAATTGAGATCAGGAGAC
CTGATTCAGTGA
Antitoxin
Download Length: 120 a.a. Molecular weight: 12947.70 Da Isoelectric Point: 6.4717
>AT30409 WP_024076057.1 NC_023064:4306820-4307179 [Pseudomonas sp. TKP]
VNNQLKYNGYIGSIEASLEDNCLFGKILFIKALVSYEGKTVAELDAAFREAVDDYLATCQTLGQTPEKPCKGSFNVRVGH
DLHLAAALAATRKKVTLNDLTRQALNEFLQHHGADPAIG
VNNQLKYNGYIGSIEASLEDNCLFGKILFIKALVSYEGKTVAELDAAFREAVDDYLATCQTLGQTPEKPCKGSFNVRVGH
DLHLAAALAATRKKVTLNDLTRQALNEFLQHHGADPAIG
Download Length: 360 bp
>AT30409 NC_023064:4306820-4307179 [Pseudomonas sp. TKP]
GTGAACAACCAACTGAAATACAACGGCTACATCGGCTCTATCGAAGCCAGCCTCGAAGACAACTGCCTGTTCGGCAAAAT
CCTCTTCATCAAGGCGCTGGTCAGCTATGAAGGGAAAACCGTCGCCGAGTTGGACGCGGCCTTCCGCGAGGCCGTGGATG
ACTATCTCGCGACCTGCCAGACCCTGGGGCAAACCCCGGAGAAGCCATGCAAAGGCTCGTTCAATGTGCGGGTCGGCCAT
GACCTGCACCTGGCCGCGGCCCTGGCGGCAACCCGTAAGAAAGTCACGCTCAACGACCTGACGCGCCAGGCGTTGAACGA
GTTCCTGCAACACCACGGCGCAGACCCGGCGATCGGTTGA
GTGAACAACCAACTGAAATACAACGGCTACATCGGCTCTATCGAAGCCAGCCTCGAAGACAACTGCCTGTTCGGCAAAAT
CCTCTTCATCAAGGCGCTGGTCAGCTATGAAGGGAAAACCGTCGCCGAGTTGGACGCGGCCTTCCGCGAGGCCGTGGATG
ACTATCTCGCGACCTGCCAGACCCTGGGGCAAACCCCGGAGAAGCCATGCAAAGGCTCGTTCAATGTGCGGGTCGGCCAT
GACCTGCACCTGGCCGCGGCCCTGGCGGCAACCCGTAAGAAAGTCACGCTCAACGACCTGACGCGCCAGGCGTTGAACGA
GTTCCTGCAACACCACGGCGCAGACCCGGCGATCGGTTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A855JTJ8 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A855JUN5 |