Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1731738..1731906 | Replicon | chromosome |
| Accession | NC_023032 | ||
| Organism | Cronobacter sakazakii CMCC 45402 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1731800..1731903 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1731738..1731906 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P262_RS08175 | 1726889..1728952 | + | 2064 | WP_007775903.1 | oligopeptidase B | - |
| P262_RS08180 | 1728949..1729611 | - | 663 | WP_007775901.1 | exodeoxyribonuclease X | - |
| P262_RS08185 | 1729684..1729914 | - | 231 | WP_007698883.1 | DNA polymerase III subunit theta | - |
| P262_RS08190 | 1730061..1730435 | + | 375 | WP_007775897.1 | CopC domain-containing protein YobA | - |
| P262_RS08195 | 1730440..1731309 | + | 870 | WP_007775896.1 | copper homeostasis membrane protein CopD | - |
| P262_RS08200 | 1731324..1731662 | + | 339 | WP_004386669.1 | YebY family protein | - |
| - | 1731738..1731906 | - | 169 | - | - | Antitoxin |
| - | 1731800..1731903 | + | 104 | - | - | Toxin |
| P262_RS23125 | 1732130..1732690 | + | 561 | WP_032968251.1 | hypothetical protein | - |
| P262_RS08210 | 1732644..1732979 | + | 336 | WP_007775885.1 | hypothetical protein | - |
| P262_RS23340 | 1733325..1733417 | + | 93 | WP_012124476.1 | hypothetical protein | - |
| P262_RS08215 | 1733774..1734418 | + | 645 | WP_023898529.1 | metallophosphoesterase | - |
| P262_RS08220 | 1734419..1734610 | - | 192 | WP_004386675.1 | YebW family protein | - |
| P262_RS08225 | 1734735..1734974 | - | 240 | WP_004386676.1 | YebV family protein | - |
| P262_RS08230 | 1735087..1736529 | - | 1443 | WP_007775872.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T30384 NC_023032:1731800-1731903 [Cronobacter malonaticus]
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 169 bp
>AT30384 NC_023032:c1731906-1731738 [Cronobacter malonaticus]
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
GATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTCAGTCGCCTTGCCTTTTAAGAATAGATGACGACACCAGCTTTTCCAGTTTGCGGCTAAAGTCGCAG
CAAAAAGCG
