Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1234743..1234886 Replicon
Accession NC_022991
Organism Salmonella enterica subsp. enterica serovar Agona str. 24249

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1234781..1234884 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1234743..1234886 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
- 1234743..1234886 - 144 NuclAT_1 - Antitoxin
- 1234781..1234884 + 104 NuclT_0 - Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- flank IS/Tn - - 1238066..1238743 677


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T30356 NC_022991:1234781-1234884 [Salmonella enterica subsp. enterica serovar Agona str. 24249]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 144 bp

>AT30356 NC_022991:c1234886-1234743 [Salmonella enterica subsp. enterica serovar Agona str. 24249]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References