Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1979688..1979956 | Replicon | chromosome |
| Accession | NC_022648 | ||
| Organism | Escherichia coli JJ1886 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1979726..1979828 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1979688..1979956 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P423_RS10115 | 1976846..1978285 | + | 1440 | WP_001296139.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| P423_RS10120 | 1978402..1978638 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| P423_RS10125 | 1978743..1978934 | + | 192 | WP_001296140.1 | YebW family protein | - |
| P423_RS10130 | 1978935..1979591 | - | 657 | WP_000812745.1 | protein-serine/threonine phosphatase | - |
| - | 1979688..1979956 | + | 269 | - | - | Antitoxin |
| - | 1979726..1979828 | - | 103 | - | - | Toxin |
| P423_RS10140 | 1979986..1980327 | - | 342 | WP_000976472.1 | YebY family protein | - |
| P423_RS10145 | 1980340..1981212 | - | 873 | WP_000879317.1 | copper homeostasis membrane protein CopD | - |
| P423_RS10150 | 1981216..1981590 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| P423_RS10155 | 1981729..1981959 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| P423_RS10160 | 1982061..1982717 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| P423_RS10165 | 1982741..1983403 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T30241 NC_022648:c1979828-1979726 [Escherichia coli JJ1886]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT30241 NC_022648:1979688-1979956 [Escherichia coli JJ1886]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
