Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | vapBC/VapC-VapB |
Location | 1244586..1245154 | Replicon | chromosome |
Accession | NC_022350 | ||
Organism | Mycobacterium tuberculosis str. Haarlem |
Toxin (Protein)
Gene name | vapC | Uniprot ID | G0TH08 |
Locus tag | TBHG_RS05920 | Protein ID | WP_003405865.1 |
Coordinates | 1244780..1245154 (+) | Length | 125 a.a. |
Antitoxin (Protein)
Gene name | vapB | Uniprot ID | G0TH07 |
Locus tag | TBHG_RS05915 | Protein ID | WP_003405863.1 |
Coordinates | 1244586..1244783 (+) | Length | 66 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
TBHG_RS05895 | 1240627..1241265 | - | 639 | WP_003898730.1 | lipid droplet-associated protein | - |
TBHG_RS05900 | 1241355..1242362 | + | 1008 | WP_003405853.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
TBHG_RS05905 | 1242379..1243362 | - | 984 | WP_003898731.1 | hypothetical protein | - |
TBHG_RS05910 | 1243425..1244498 | + | 1074 | WP_003898732.1 | redox-regulated ATPase YchF | - |
TBHG_RS05915 | 1244586..1244783 | + | 198 | WP_003405863.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin |
TBHG_RS05920 | 1244780..1245154 | + | 375 | WP_003405865.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
TBHG_RS05925 | 1245357..1246055 | + | 699 | WP_003898733.1 | hypothetical protein | - |
TBHG_RS05930 | 1246173..1246358 | + | 186 | WP_003901093.1 | hypothetical protein | - |
TBHG_RS05935 | 1246285..1246560 | - | 276 | WP_003405867.1 | hypothetical protein | - |
TBHG_RS05940 | 1246803..1247126 | + | 324 | WP_003405871.1 | antibiotic biosynthesis monooxygenase | - |
TBHG_RS05945 | 1247141..1247851 | - | 711 | WP_003911399.1 | hypothetical protein | - |
TBHG_RS22340 | 1247873..1248082 | + | 210 | WP_003911400.1 | hypothetical protein | - |
TBHG_RS05955 | 1248034..1248741 | - | 708 | Protein_1167 | adenylate/guanylate cyclase domain-containing protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 125 a.a. Molecular weight: 13444.56 Da Isoelectric Point: 5.1881
>T30032 WP_003405865.1 NC_022350:1244780-1245154 [Mycobacterium tuberculosis str. Haarlem]
VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQFPVVTHDEVLRLVGRRRLWGR
GLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALAEEVS
VILVDTSVWIEHLRAADARLVELLGDDEAGCHPLVIEELALGSIKQRDVVLDLLANLYQFPVVTHDEVLRLVGRRRLWGR
GLGAVDANLLGSVALVGGARLWTRDKRLKAACAESGVALAEEVS
Download Length: 375 bp
>T30032 NC_022350:1244780-1245154 [Mycobacterium tuberculosis str. Haarlem]
GTGATCCTGGTCGACACTTCGGTATGGATTGAGCACCTGCGCGCCGCCGACGCGCGACTCGTCGAGCTGCTGGGCGATGA
CGAGGCCGGTTGCCATCCGCTCGTCATCGAGGAGCTGGCGCTTGGCTCGATCAAGCAGCGAGACGTTGTTCTCGATCTGT
TGGCCAACCTCTACCAGTTTCCGGTGGTGACCCACGACGAAGTGTTGCGGCTTGTCGGTCGGCGGCGGTTGTGGGGTCGG
GGACTCGGTGCCGTCGATGCCAACCTTCTTGGTTCGGTGGCTCTGGTTGGCGGCGCGCGACTATGGACGCGGGACAAGCG
GTTGAAGGCGGCGTGCGCGGAAAGCGGTGTTGCGCTGGCTGAGGAAGTGTCCTGA
GTGATCCTGGTCGACACTTCGGTATGGATTGAGCACCTGCGCGCCGCCGACGCGCGACTCGTCGAGCTGCTGGGCGATGA
CGAGGCCGGTTGCCATCCGCTCGTCATCGAGGAGCTGGCGCTTGGCTCGATCAAGCAGCGAGACGTTGTTCTCGATCTGT
TGGCCAACCTCTACCAGTTTCCGGTGGTGACCCACGACGAAGTGTTGCGGCTTGTCGGTCGGCGGCGGTTGTGGGGTCGG
GGACTCGGTGCCGTCGATGCCAACCTTCTTGGTTCGGTGGCTCTGGTTGGCGGCGCGCGACTATGGACGCGGGACAAGCG
GTTGAAGGCGGCGTGCGCGGAAAGCGGTGTTGCGCTGGCTGAGGAAGTGTCCTGA
Antitoxin
Download Length: 66 a.a. Molecular weight: 6973.03 Da Isoelectric Point: 11.7327
>AT30032 WP_003405863.1 NC_022350:1244586-1244783 [Mycobacterium tuberculosis str. Haarlem]
MRTTVTVDDALLAKAAELTGVKEKSTLLREGLQTLVRVESARRLAALGGTDPQATAAPRRRTSPR
MRTTVTVDDALLAKAAELTGVKEKSTLLREGLQTLVRVESARRLAALGGTDPQATAAPRRRTSPR
Download Length: 198 bp
>AT30032 NC_022350:1244586-1244783 [Mycobacterium tuberculosis str. Haarlem]
ATGAGGACGACGGTGACCGTTGACGACGCCTTGTTAGCCAAAGCGGCCGAATTGACTGGGGTGAAAGAGAAGTCGACGCT
CCTGCGCGAGGGGTTGCAGACACTGGTCCGGGTGGAGAGCGCCCGGCGGTTGGCGGCTCTCGGCGGCACCGACCCGCAAG
CTACCGCGGCGCCGAGACGCCGGACGTCGCCCCGGTGA
ATGAGGACGACGGTGACCGTTGACGACGCCTTGTTAGCCAAAGCGGCCGAATTGACTGGGGTGAAAGAGAAGTCGACGCT
CCTGCGCGAGGGGTTGCAGACACTGGTCCGGGTGGAGAGCGCCCGGCGGTTGGCGGCTCTCGGCGGCACCGACCCGCAAG
CTACCGCGGCGCCGAGACGCCGGACGTCGCCCCGGTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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