Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) mazEF/MazF(toxin)
Location 523267..523904 Replicon
Accession NC_022075
Organism Bacillus amyloliquefaciens subsp. plantarum UCMB5033

Toxin (Protein)


Gene name mazF Uniprot ID G4NU33
Locus tag RBAU_RS02480 Protein ID WP_003156187.1
Coordinates 523554..523904 (+) Length 117 a.a.

Antitoxin (Protein)


Gene name mazE Uniprot ID I2HMS5
Locus tag RBAU_RS02475 Protein ID WP_003156188.1
Coordinates 523267..523548 (+) Length 94 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
RBAU_RS02455 519632..520231 - 600 WP_020953896.1 rhomboid family intramembrane serine protease -
RBAU_RS02460 520324..520689 + 366 WP_007410229.1 holo-ACP synthase -
RBAU_RS02465 520854..521861 + 1008 WP_007410230.1 outer membrane lipoprotein carrier protein LolA -
RBAU_RS02470 521978..523147 + 1170 WP_007410231.1 alanine racemase -
RBAU_RS02475 523267..523548 + 282 WP_003156188.1 type II toxin-antitoxin system antitoxin EndoAI Antitoxin
RBAU_RS02480 523554..523904 + 351 WP_003156187.1 type II toxin-antitoxin system endoribonuclease NdoA Toxin
RBAU_RS02485 524025..524846 + 822 WP_007410232.1 STAS domain-containing protein -
RBAU_RS02490 524851..525216 + 366 WP_003156180.1 RsbT antagonist protein RsbS -
RBAU_RS02495 525219..525620 + 402 WP_003156178.1 anti-sigma regulatory factor -
RBAU_RS02500 525632..526639 + 1008 WP_007410233.1 PP2C family protein-serine/threonine phosphatase -
RBAU_RS02505 526703..527032 + 330 WP_003156176.1 anti-sigma factor antagonist RsbV -
RBAU_RS02510 527029..527511 + 483 WP_003156173.1 anti-sigma B factor RsbW -
RBAU_RS02515 527477..528265 + 789 WP_003156171.1 RNA polymerase sigma factor SigB -
RBAU_RS02520 528265..528867 + 603 WP_007410234.1 SpoIIE family protein phosphatase -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(4-111)

Antitoxin

(12-45)


Sequences


Toxin        


Download         Length: 117 a.a.        Molecular weight: 12977.98 Da        Isoelectric Point: 4.8781

>T29910 WP_003156187.1 NC_022075:523554-523904 [Bacillus velezensis UCMB5033]
MIVKRGDVYFADLSPVVGSEQGGVRPVLVIQNDIGNRFSPTAIVAAITAQIQKAKLPTHVEIDAKRYGFERDSVILLEQI
RTIDKQRLTDKITHLDDEMMDKVDEALQISLALIDF

Download         Length: 351 bp

>T29910 NC_022075:523554-523904 [Bacillus velezensis UCMB5033]
TTGATTGTAAAGCGCGGCGATGTTTATTTTGCTGATTTATCTCCTGTTGTTGGCTCAGAGCAAGGCGGCGTACGCCCGGT
TTTAGTGATCCAAAATGATATCGGAAATCGCTTTAGCCCGACTGCTATTGTTGCAGCCATAACAGCCCAAATACAGAAAG
CGAAATTACCAACCCACGTCGAAATTGATGCAAAACGCTACGGTTTTGAAAGAGATTCCGTTATTTTGCTGGAGCAAATT
CGGACGATTGACAAGCAAAGATTAACGGATAAAATAACTCATCTGGATGATGAAATGATGGATAAGGTTGATGAAGCCCT
GCAAATCAGTTTGGCACTCATTGATTTTTAG

Antitoxin


Download         Length: 94 a.a.        Molecular weight: 10562.92 Da        Isoelectric Point: 6.4706

>AT29910 WP_003156188.1 NC_022075:523267-523548 [Bacillus velezensis UCMB5033]
MSESSARTEMKISLPENLVAELDGVAMREKRSRNELISQAVRAYVSERTTRHNRDLMRRGYMEMAKINLNISSEAHYAEC
EAETTVERLVSGG

Download         Length: 282 bp

>AT29910 NC_022075:523267-523548 [Bacillus velezensis UCMB5033]
TTGTCTGAATCCAGCGCAAGAACCGAAATGAAAATCAGCTTGCCTGAAAACTTAGTAGCTGAATTGGATGGTGTAGCGAT
GCGGGAGAAACGAAGCAGAAACGAACTGATATCACAAGCAGTGAGAGCGTATGTCAGCGAACGGACAACTCGCCATAACC
GTGATTTGATGAGACGCGGGTATATGGAAATGGCGAAAATCAACTTGAATATCTCTTCTGAGGCTCACTATGCTGAGTGC
GAAGCAGAAACGACCGTTGAGCGCTTAGTCAGCGGAGGATAA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
PDB 4MDX
PDB 4ME7
PDB 1NE8


Antitoxin

Source ID Structure
AlphaFold DB I2HMS5

References