Detailed information of TA system TA029895

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): relBE/RelE-RHH
• Location: 892..1328
• Replicon: plasmid Apa386Bp6
• Accession: NC_021978
• Organism: Acetobacter pasteurianus 386B

Toxin (Protein)

• Gene name: relE
• Uniprot ID: -
• Locus tag: APA386B_RS14305
• Protein ID: WP_040133543.1
• Coordinates: 892..1173 (-)
• Length: 94 a.a.

Antitoxin (Protein)

• Gene name: relB
• Uniprot ID: -
• Locus tag: APA386B_RS14310
• Protein ID: WP_086635114.1
• Coordinates: 1170..1328 (-)
• Length: 53 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
APA386B_RS14300	547..864	-	318	WP_040133542.1	hypothetical protein	-
APA386B_RS14305	892..1173	-	282	WP_040133543.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
APA386B_RS14310	1170..1328	-	159	WP_086635114.1	CopG family transcriptional regulator	Antitoxin
APA386B_RS14315	1346..1810	-	465	WP_020936806.1	replication/maintenance protein RepL	-
APA386B_RS15275	2123..2290	-	168	WP_158310579.1	hypothetical protein	-
APA386B_RS14325	2991..4136	-	1146	WP_020936807.1	restriction endonuclease subunit S	-
APA386B_RS15280	4608..4763	-	156	WP_020936808.1	hypothetical protein	-
APA386B_RS14335	4766..5068	-	303	WP_040133546.1	hypothetical protein	-
APA386B_RS14980	5246..6025	+	780	Protein_8	MobA/MobL family protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Non-Mobilizable plasmid	-	-	1..6548	6548

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Zeta toxin domain (24-215)

Antitoxin

• Cro/C1-type helix-turn-helix domain (6-58)

Sequences

Toxin

Protein

• Length: 94 a.a.
• Molecular weight: 13852.62 Da
• Isoelectric Point: 5.5500

>T29895 WP_040133543.1 NC_021978:c1173-892 [Acetobacter pasteurianus 386B]
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF
FFFFFFFFFFFFFF

Nucleotide

• Length: 282 bp

>T29895 NC_021978:c1173-892 [Acetobacter pasteurianus 386B]
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Antitoxin

Protein

• Length: 53 a.a.
• Molecular weight: 7818.38 Da
• Isoelectric Point: 5.5500

>AT29895 WP_086635114.1 NC_021978:c1328-1170 [Acetobacter pasteurianus 386B]
FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFF

Nucleotide

• Length: 159 bp

>AT29895 NC_021978:c1328-1170 [Acetobacter pasteurianus 386B]
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