Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) tacAT/DUF1778(antitoxin)
Location 1039541..1040331 Replicon plasmid pRetMIM1f
Accession NC_021911
Organism Rhizobium etli bv. mimosae str. Mim1

Toxin (Protein)


Gene name TacT2 Uniprot ID S5S9T1
Locus tag REMIM1_RS34225 Protein ID WP_020919957.1
Coordinates 1039541..1040038 (-) Length 166 a.a.

Antitoxin (Protein)


Gene name TacA2 Uniprot ID S5SHB4
Locus tag REMIM1_RS34230 Protein ID WP_020919958.1
Coordinates 1040035..1040331 (-) Length 99 a.a.

Genomic Context

REMIM1_RS34205REMIM1_RS34210REMIM1_RS34215REMIM1_RS34220REMIM1_RS34225REMIM1_RS34230REMIM1_RS34240REMIM1_RS34245REMIM1_RS34255REMIM1_RS34260
Location: 1034637..1034945 (309 bp)
Type: Others
Protein ID: WP_020919953.1
Location: 1034942..1035559 (618 bp)
Type: Others
Protein ID: WP_020919954.1
Location: 1035717..1037339 (1623 bp)
Type: Others
Protein ID: WP_020919955.1
Location: 1037714..1038652 (939 bp)
Type: Others
Protein ID: WP_020919956.1
Location: 1039541..1040038 (498 bp)
Type: Toxin
Protein ID: WP_020919957.1
Location: 1040035..1040331 (297 bp)
Type: Antitoxin
Protein ID: WP_020919958.1
Location: 1040879..1041427 (549 bp)
Type: Others
Protein ID: WP_011428446.1
Location: 1041623..1042528 (906 bp)
Type: Others
Protein ID: WP_020919960.1
Location: 1043055..1043315 (261 bp)
Type: Others
Protein ID: WP_041679349.1
Location: 1043717..1044184 (468 bp)
Type: Others
Protein ID: WP_020919963.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
REMIM1_RS342051034637..1034945+309WP_020919953.1hypothetical protein-
REMIM1_RS342101034942..1035559+618WP_020919954.1exopolysaccharide biosynthesis protein-
REMIM1_RS342151035717..1037339-1623WP_020919955.1EAL domain-containing protein-
REMIM1_RS342201037714..1038652-939WP_020919956.1SGNH family esterase-
REMIM1_RS342251039541..1040038-498WP_020919957.1GNAT family N-acetyltransferaseToxin
REMIM1_RS342301040035..1040331-297WP_020919958.1DUF1778 domain-containing proteinAntitoxin
REMIM1_RS342401040879..1041427-549WP_011428446.1DUF1003 domain-containing protein-
REMIM1_RS342451041623..1042528-906WP_020919960.1NAD(P)/FAD-dependent oxidoreductase-
REMIM1_RS342551043055..1043315-261WP_041679349.1DUF982 domain-containing protein-
REMIM1_RS342601043717..1044184-468WP_020919963.1DUF2269 domain-containing protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideConjugative plasmid-htpB1..10826591082659


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

GNAT domain

(36-142)

Antitoxin

Vibrio phage ICP1, Orf50

(7-97)


Sequences

Toxin        


Download         Length: 166 a.a.        Molecular weight: 17831.30 Da        Isoelectric Point: 7.3587

>T29889 WP_020919957.1 NC_021911:c1040038-1039541 [Rhizobium etli bv. mimosae str. Mim1]
VTLSAPAPLAEHHELAEFNSGVGELDDWLRRRARSNQTSGASRTFVVCEESRVIAYYALASGAVRQPQAPGRFRRNMPDP
IPVAVLGRLAIDQSYQGRGIGRALVRDAGLRLLNAAEVLGIRGMLVHAISDDARAFYEAVGFLSSPSDPMVLMVGLHDLN
NALNP

Download         Length: 498 bp

>T29889 NC_021911:c1040038-1039541 [Rhizobium etli bv. mimosae str. Mim1]
GTGACCCTCAGCGCACCGGCACCCCTGGCCGAACATCATGAGCTGGCCGAGTTCAATTCCGGAGTCGGGGAACTTGACGA
CTGGCTGCGACGTCGCGCCCGTTCTAATCAGACAAGCGGCGCATCGCGGACCTTCGTCGTGTGCGAGGAGAGCCGCGTCA
TCGCCTATTACGCGCTCGCTTCCGGCGCCGTCAGACAGCCGCAAGCACCTGGCCGTTTTCGGCGCAATATGCCTGACCCA
ATTCCGGTCGCTGTTCTCGGCCGCCTCGCCATTGATCAATCCTACCAAGGGCGCGGTATCGGCAGGGCATTGGTGCGCGA
CGCGGGCCTGCGCCTGCTCAATGCCGCTGAAGTGCTTGGCATTCGAGGTATGCTCGTTCATGCGATTTCAGATGACGCAC
GAGCCTTCTACGAGGCCGTCGGCTTCCTGTCTTCTCCCTCAGACCCCATGGTGCTGATGGTCGGATTGCATGACCTCAAT
AACGCGCTGAACCCTTAG

Antitoxin


Download         Length: 99 a.a.        Molecular weight: 11093.58 Da        Isoelectric Point: 5.8769

>AT29889 WP_020919958.1 NC_021911:c1040331-1040035 [Rhizobium etli bv. mimosae str. Mim1]
MPTSHTSKSSDASVPLNMRIKPATRNLIDRAAELLGKTRTDFMLEASERRAEEVLLDRTIFTVSPEIYAEYLTRLDAPTQ
PNERLARTMSTKAPWDEA

Download         Length: 297 bp

>AT29889 NC_021911:c1040331-1040035 [Rhizobium etli bv. mimosae str. Mim1]
ATGCCGACCTCACACACGAGCAAGAGCTCGGACGCAAGCGTCCCGCTAAATATGCGCATCAAGCCTGCAACCCGCAATCT
GATCGATCGAGCCGCTGAGTTGCTTGGTAAGACGCGCACGGATTTCATGTTGGAAGCTTCCGAGCGCCGAGCCGAGGAAG
TGCTGCTCGACCGCACTATCTTCACGGTAAGCCCGGAAATCTATGCGGAATACCTTACTCGGCTCGATGCACCCACGCAG
CCCAATGAGCGTCTAGCACGCACCATGTCGACCAAGGCACCGTGGGATGAGGCGTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
AlphaFold DBS5S9T1

Antitoxin

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Source
ID
Structure
AlphaFold DBS5SHB4

References