Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VapB
Location 1690083..1690677 Replicon chromosome
Accession NC_021905
Organism Rhizobium etli bv. mimosae str. Mim1

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag REMIM1_RS08575 Protein ID WP_041678860.1
Coordinates 1690083..1690472 (-) Length 130 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag REMIM1_RS35390 Protein ID WP_080655789.1
Coordinates 1690456..1690677 (-) Length 74 a.a.

Genomic Context

REMIM1_RS08570REMIM1_RS08585REMIM1_RS08555REMIM1_RS08560REMIM1_RS08565REMIM1_RS08575REMIM1_RS35390REMIM1_RS08580
Location: 1688413..1690071 (1659 bp)
Type: Others
Protein ID: WP_020921029.1
Location: 1694332..1695591 (1260 bp)
Type: Others
Protein ID: WP_041678621.1
Location: 1685326..1685946 (621 bp)
Type: Others
Protein ID: WP_020921027.1
Location: 1685992..1687281 (1290 bp)
Type: Others
Protein ID: WP_020921028.1
Location: 1687278..1688234 (957 bp)
Type: Others
Protein ID: WP_011424957.1
Location: 1690083..1690472 (390 bp)
Type: Toxin
Protein ID: WP_041678860.1
Location: 1690456..1690677 (222 bp)
Type: Antitoxin
Protein ID: WP_080655789.1
Location: 1690824..1693709 (2886 bp)
Type: Others
Protein ID: WP_020921031.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
REMIM1_RS085551685326..1685946-621WP_020921027.1glycerol-3-phosphate 1-O-acyltransferase PlsY-
REMIM1_RS085601685992..1687281-1290WP_020921028.1dihydroorotase-
REMIM1_RS085651687278..1688234-957WP_011424957.1aspartate carbamoyltransferase catalytic subunit-
REMIM1_RS085701688413..1690071+1659WP_020921029.1acyl-CoA dehydrogenase family protein-
REMIM1_RS085751690083..1690472-390WP_041678860.1PIN domain nucleaseToxin
REMIM1_RS353901690456..1690677-222WP_080655789.1type II toxin-antitoxin system VapB family antitoxinAntitoxin
REMIM1_RS085801690824..1693709-2886WP_020921031.1Rne/Rng family ribonuclease-
REMIM1_RS085851694332..1695591+1260WP_041678621.1N-acetylmuramoyl-L-alanine amidase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-120)

Antitoxin

Bacterial antitoxin of type II TA system, VapB

(1-43)


Sequences

Toxin        


Download         Length: 130 a.a.        Molecular weight: 14745.05 Da        Isoelectric Point: 6.6425

>T29883 WP_041678860.1 NC_021905:c1690472-1690083 [Rhizobium etli bv. mimosae str. Mim1]
VIVVDSSVWIPHLRGIENAARRRLQNIEDPLEILVGDLILMEVLQGARDDRHATTIEANLRQFTIRPMLDDSLAVRAARN
YRLLRERGITMRKTIDVIIGTFCIQEGHSLLHDDRDFDPMAQHLGLKIA

Download         Length: 390 bp

>T29883 NC_021905:c1690472-1690083 [Rhizobium etli bv. mimosae str. Mim1]
GTGATCGTCGTCGATAGTTCGGTCTGGATTCCGCATCTACGTGGGATAGAAAACGCCGCTAGACGGCGTCTGCAGAATAT
CGAAGATCCGCTGGAGATTCTTGTTGGCGATCTTATTCTTATGGAGGTCCTCCAAGGCGCGCGCGATGACCGTCATGCAA
CCACCATCGAAGCGAATTTGCGCCAATTCACGATCCGTCCGATGCTTGACGACAGCCTCGCCGTTAGGGCAGCCCGCAAT
TATCGCCTGCTGCGGGAACGCGGTATCACAATGCGCAAGACCATCGACGTAATCATTGGCACATTCTGCATTCAAGAAGG
CCACTCGCTCTTGCACGATGATAGGGATTTCGATCCCATGGCCCAGCATCTCGGTCTCAAGATCGCCTGA

Antitoxin


Download         Length: 74 a.a.        Molecular weight: 8171.25 Da        Isoelectric Point: 10.9254

>AT29883 WP_080655789.1 NC_021905:c1690677-1690456 [Rhizobium etli bv. mimosae str. Mim1]
MRTNIDIDDALLHAAMTATGLATKKATIEQALRSLVDRHRRKNAIANLSGIGWEGDLEGMRRDRPEGTSDRRR

Download         Length: 222 bp

>AT29883 NC_021905:c1690677-1690456 [Rhizobium etli bv. mimosae str. Mim1]
ATGCGGACGAATATAGATATCGATGATGCCTTGCTCCACGCAGCGATGACCGCCACGGGGTTGGCGACGAAAAAAGCTAC
CATTGAACAGGCCCTCCGAAGCCTCGTCGACAGGCACCGCAGAAAAAATGCGATCGCAAATCTCTCTGGAATCGGCTGGG
AGGGTGATCTGGAAGGGATGCGCCGCGATCGACCGGAAGGAACCAGTGATCGTCGTCGATAG

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References