Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2998504..2998649 Replicon
Accession NC_021902
Organism Salmonella enterica subsp. enterica serovar Newport str.

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2998506..2998609 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2998504..2998649 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
- 2998504..2998649 + 146 NuclAT_1 - Antitoxin
- 2998506..2998609 - 104 NuclT_0 - Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 2976618..3004311 27693


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T29875 NC_021902:c2998609-2998506 [Salmonella enterica subsp. enterica serovar Newport str.]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 146 bp

>AT29875 NC_021902:2998504-2998649 [Salmonella enterica subsp. enterica serovar Newport str.]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References