Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1958487..1958635 | Replicon | chromosome |
| Accession | NC_021870 | ||
| Organism | Salmonella bongori N268-08 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1958494..1958597 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1958487..1958635 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A464_RS09410 | 1954658..1955380 | - | 723 | WP_024143305.1 | type III secretion system guanine nucleotide exchange factor SopE2 | - |
| A464_RS09415 | 1956005..1956481 | + | 477 | WP_000076084.1 | hypothetical protein | - |
| A464_RS09420 | 1957067..1958209 | + | 1143 | WP_042916912.1 | lipopolysaccharide N-acetylglucosaminyltransferase | - |
| - | 1958487..1958635 | + | 149 | - | - | Antitoxin |
| - | 1958494..1958597 | - | 104 | - | - | Toxin |
| A464_RS09430 | 1958741..1959091 | - | 351 | WP_000746718.1 | YebY family protein | - |
| A464_RS09435 | 1959108..1959983 | - | 876 | WP_020844488.1 | copper homeostasis membrane protein CopD | - |
| A464_RS09440 | 1959984..1960358 | - | 375 | WP_020844489.1 | CopC domain-containing protein YobA | - |
| A464_RS09445 | 1960496..1960726 | + | 231 | WP_000856226.1 | DNA polymerase III subunit theta | - |
| A464_RS09450 | 1960834..1961490 | + | 657 | WP_000100264.1 | carbon-nitrogen hydrolase family protein | - |
| A464_RS09455 | 1961514..1962203 | + | 690 | WP_000944290.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T29843 NC_021870:c1958597-1958494 [Salmonella bongori N268-08]
GGCAGGGCGACTTAACCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGCGACTTAACCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 149 bp
>AT29843 NC_021870:1958487-1958635 [Salmonella bongori N268-08]
AACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGTTAAGTCGCCCTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
AACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGTTAAGTCGCCCTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
