Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2941209..2941352 Replicon
Accession NC_021818
Organism Salmonella enterica subsp. enterica serovar Cubana str. CFSAN002050

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2941211..2941314 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2941209..2941352 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
- 2941209..2941352 + 144 NuclAT_1 - Antitoxin
- 2941211..2941314 - 104 NuclT_0 - Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- flank IS/Tn - - 2937426..2937764 338


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T29814 NC_021818:c2941314-2941211 [Salmonella enterica subsp. enterica serovar Cubana str. CFSAN002050]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 144 bp

>AT29814 NC_021818:2941209-2941352 [Salmonella enterica subsp. enterica serovar Cubana str. CFSAN002050]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References