Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1588040..1588185 Replicon
Accession NC_021814
Organism Salmonella enterica subsp. enterica serovar Typhimurium var. 5-

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1588080..1588183 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1588040..1588185 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
- 1588040..1588185 - 146 NuclAT_1 - Antitoxin
- 1588080..1588183 + 104 NuclT_0 - Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - sopE2 1566172..1623395 57223


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T29805 NC_021814:1588080-1588183 [Salmonella enterica subsp. enterica serovar Typhimurium var. 5-]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 146 bp

>AT29805 NC_021814:c1588185-1588040 [Salmonella enterica subsp. enterica serovar Typhimurium var. 5-]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References