Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3764520..3764663 Replicon
Accession NC_021810
Organism Salmonella enterica subsp. enterica serovar Heidelberg str. 41578

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3764522..3764625 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3764520..3764663 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
- 3764520..3764663 + 144 NuclAT_1 - Antitoxin
- 3764522..3764625 - 104 NuclT_0 - Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - sopE2 3732002..3786533 54531


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T29788 NC_021810:c3764625-3764522 [Salmonella enterica subsp. enterica serovar Heidelberg str. 41578]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 144 bp

>AT29788 NC_021810:3764520-3764663 [Salmonella enterica subsp. enterica serovar Heidelberg str. 41578]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References