Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1984568..1984691 | Replicon | chromosome |
| Accession | NC_021741 | ||
| Organism | Serratia liquefaciens ATCC 27592 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1984590..1984686 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1984568..1984691 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M495_RS09250 | 1979750..1980175 | + | 426 | WP_020826374.1 | RNA polymerase-binding protein DksA | - |
| M495_RS09255 | 1980348..1981301 | + | 954 | WP_020826375.1 | prolyl aminopeptidase | - |
| M495_RS09260 | 1981332..1981562 | - | 231 | WP_020826376.1 | DNA polymerase III subunit theta | - |
| M495_RS09265 | 1981935..1982453 | + | 519 | WP_020826377.1 | non-heme ferritin | - |
| M495_RS09270 | 1982769..1983152 | + | 384 | WP_020826378.1 | CopC domain-containing protein YobA | - |
| M495_RS09275 | 1983156..1984037 | + | 882 | WP_020826379.1 | copper homeostasis membrane protein CopD | - |
| M495_RS09280 | 1984107..1984448 | + | 342 | WP_020826380.1 | YebY family protein | - |
| - | 1984568..1984691 | - | 124 | - | - | Antitoxin |
| - | 1984590..1984686 | + | 97 | - | - | Toxin |
| M495_RS25780 | 1985088..1985369 | - | 282 | WP_020826382.1 | hypothetical protein | - |
| M495_RS09290 | 1985532..1987223 | - | 1692 | WP_020826383.1 | hypothetical protein | - |
| M495_RS09295 | 1987925..1988491 | - | 567 | WP_051150510.1 | DUF4136 domain-containing protein | - |
| M495_RS09300 | 1988763..1989113 | + | 351 | WP_041415315.1 | DUF4377 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T29763 NC_021741:1984590-1984686 [Serratia liquefaciens ATCC 27592]
AACAAGCCTTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCTTGCACAAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 124 bp
>AT29763 NC_021741:c1984691-1984568 [Serratia liquefaciens ATCC 27592]
AACACAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTTTGTGCAAGGCTTGTTCAGCCGTGCACTTTAAGAGTAG
AACACAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTTTGTGCAAGGCTTGTTCAGCCGTGCACTTTAAGAGTAG
